diff options
| -rw-r--r-- | pyproject.toml | 9 | ||||
| -rw-r--r-- | requirements/all_requirements.txt | 575 | ||||
| -rwxr-xr-x | requirements/compile.sh | 2 | ||||
| -rw-r--r-- | requirements/dev_requirements.txt | 523 | ||||
| -rw-r--r-- | requirements/nlp_requirements.txt | 248 | ||||
| -rw-r--r-- | requirements/requirements.txt | 428 | ||||
| -rw-r--r-- | requirements/test_requirements.txt | 441 |
7 files changed, 1054 insertions, 1172 deletions
diff --git a/pyproject.toml b/pyproject.toml index 19b34bdf..ad63b424 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -83,7 +83,14 @@ "ipython!=8.7.0", ] test = ["pytest", "coverage", "pytest-cov"] - nlp = ["catboost", "optuna", "setfit", "umap-learn", "plotly", "sklearn"] + nlp = [ + "catboost", + "optuna", + "setfit", + "umap-learn[plot]", + "plotly", + "scikit-learn", + ] [project.urls] Homepage = "https://seccerts.org" diff --git a/requirements/all_requirements.txt b/requirements/all_requirements.txt index d07b62b8..eb27d265 100644 --- a/requirements/all_requirements.txt +++ b/requirements/all_requirements.txt @@ -1,6 +1,6 @@ -accessible-pygments==0.0.3 +accessible-pygments==0.0.4 # via pydata-sphinx-theme -aiohttp==3.8.4 +aiohttp==3.9.0 # via # datasets # fsspec @@ -10,93 +10,120 @@ alabaster==0.7.13 # via sphinx alembic==1.12.1 # via optuna -asttokens==2.2.1 +annotated-types==0.6.0 + # via pydantic +appnope==0.1.3 + # via + # ipykernel + # ipython +asttokens==2.4.1 # via stack-data -async-timeout==4.0.2 +async-timeout==4.0.3 # via aiohttp -attrs==22.2.0 +attrs==23.1.0 # via # aiohttp # jsonschema # jupyter-cache - # pytest -babel==2.12.1 + # referencing +babel==2.13.1 # via # pydata-sphinx-theme # sphinx -backcall==0.2.0 - # via ipython -beautifulsoup4==4.11.2 +beautifulsoup4==4.12.2 # via # pydata-sphinx-theme # sec-certs (./../pyproject.toml) -black==23.1.0 - # via sec-certs (./../pyproject.toml) -blis==0.7.9 +bleach==6.1.0 + # via panel +blis==0.7.11 # via thinc -build==0.10.0 +bokeh==3.3.1 + # via + # panel + # umap-learn +build==1.0.3 # via pip-tools -catalogue==2.0.8 +catalogue==2.0.10 # via # spacy # srsly # thinc catboost==1.2.2 # via sec-certs (./../pyproject.toml) -certifi==2022.12.7 +certifi==2023.11.17 # via requests -cfgv==3.3.1 +cffi==1.16.0 + # via cryptography +cfgv==3.4.0 # via pre-commit -charset-normalizer==3.1.0 - # via - # aiohttp - # requests -click==8.1.3 +charset-normalizer==3.3.2 + # via requests +click==8.1.7 # via - # black + # dask # jupyter-cache # nltk # pip-tools # sec-certs (./../pyproject.toml) # typer -cmake==3.27.7 - # via triton +cloudpathlib==0.16.0 + # via weasel +cloudpickle==3.0.0 + # via dask +colorcet==3.0.1 + # via + # datashader + # holoviews + # umap-learn colorlog==6.7.0 # via optuna -comm==0.1.2 - # via ipykernel -confection==0.0.4 - # via thinc -contourpy==1.0.7 - # via matplotlib -coverage[toml]==7.2.2 +comm==0.2.0 + # via + # ipykernel + # ipywidgets +confection==0.1.3 + # via + # thinc + # weasel +contourpy==1.2.0 + # via + # bokeh + # matplotlib +coverage[toml]==7.3.2 # via # pytest-cov # sec-certs (./../pyproject.toml) -cycler==0.11.0 +cryptography==41.0.5 + # via pypdf +cycler==0.12.1 # via matplotlib -cymem==2.0.7 +cymem==2.0.8 # via # preshed # spacy # thinc -datasets==2.10.1 +dask==2023.11.0 + # via datashader +datasets==2.15.0 # via # evaluate # sec-certs (./../pyproject.toml) # setfit -debugpy==1.6.6 +datashader==0.16.0 + # via umap-learn +debugpy==1.8.0 # via ipykernel decorator==5.1.1 # via ipython -deprecation==2.1.0 +deprecated==1.2.14 # via pikepdf -dill==0.3.6 +dill==0.3.7 # via # datasets # evaluate # multiprocess -distlib==0.3.6 +distlib==0.3.7 # via virtualenv distro==1.8.0 # via tabula-py @@ -105,139 +132,162 @@ docutils==0.19 # myst-parser # pydata-sphinx-theme # sphinx -evaluate==0.4.0 +evaluate==0.4.1 # via setfit -executing==1.2.0 +exceptiongroup==1.2.0 + # via + # ipython + # pytest +executing==2.0.1 # via stack-data -fastjsonschema==2.16.3 +fastjsonschema==2.19.0 # via nbformat -filelock==3.10.0 +filelock==3.13.1 # via # huggingface-hub # torch # transformers - # triton # virtualenv -fonttools==4.39.2 +fonttools==4.45.0 # via matplotlib -frozenlist==1.3.3 +frozenlist==1.4.0 # via # aiohttp # aiosignal -fsspec[http]==2023.3.0 +fsspec[http]==2023.10.0 # via + # dask # datasets # evaluate # fsspec + # huggingface-hub + # torch gprof2dot==2022.7.29 # via pytest-profiling graphviz==0.20.1 # via catboost -greenlet==2.0.2 +greenlet==3.0.1 # via sqlalchemy +holoviews==1.18.1 + # via umap-learn html5lib==1.1 # via sec-certs (./../pyproject.toml) -huggingface-hub==0.13.2 +huggingface-hub==0.19.4 # via # datasets # evaluate # sentence-transformers + # tokenizers # transformers -identify==2.5.21 +identify==2.5.32 # via pre-commit idna==3.4 # via # requests # yarl +imageio==2.33.0 + # via scikit-image imagesize==1.4.1 # via sphinx -importlib-metadata==6.0.0 +importlib-metadata==6.8.0 # via + # dask # jupyter-cache # myst-nb iniconfig==2.0.0 # via pytest -ipykernel==6.21.3 +ipykernel==6.27.0 # via - # ipywidgets # myst-nb # sec-certs (./../pyproject.toml) -ipython==8.11.0 +ipython==8.17.2 # via # ipykernel # ipywidgets # myst-nb # sec-certs (./../pyproject.toml) -ipywidgets==8.0.4 +ipywidgets==8.1.1 # via sec-certs (./../pyproject.toml) -jedi==0.18.2 +jedi==0.19.1 # via ipython jinja2==3.1.2 # via + # bokeh # myst-parser # spacy # sphinx # torch -joblib==1.2.0 +joblib==1.3.2 # via # nltk # pynndescent # scikit-learn -jsonschema==4.17.3 +jsonschema==4.20.0 # via # nbformat # sec-certs (./../pyproject.toml) -jupyter-cache==0.5.0 +jsonschema-specifications==2023.11.1 + # via jsonschema +jupyter-cache==1.0.0 # via myst-nb -jupyter-client==8.0.3 +jupyter-client==8.6.0 # via # ipykernel # nbclient -jupyter-core==5.3.0 +jupyter-core==5.5.0 # via # ipykernel # jupyter-client + # nbclient # nbformat -jupyterlab-widgets==3.0.5 +jupyterlab-widgets==3.0.9 # via ipywidgets -kiwisolver==1.4.4 +kiwisolver==1.4.5 # via matplotlib langcodes==3.3.0 # via spacy -langdetect==1.0.9 - # via sec-certs (./../pyproject.toml) -lit==17.0.3 - # via triton +lazy-loader==0.3 + # via scikit-image +linkify-it-py==2.0.2 + # via panel llvmlite==0.41.1 # via # numba # pynndescent -lxml==4.9.2 +locket==1.0.0 + # via partd +lxml==4.9.3 # via # pikepdf # sec-certs (./../pyproject.toml) mako==1.3.0 # via alembic -markdown-it-py==2.2.0 +markdown==3.5.1 + # via panel +markdown-it-py==3.0.0 # via # mdit-py-plugins # myst-parser -markupsafe==2.1.2 + # panel +markupsafe==2.1.3 # via # jinja2 # mako -matplotlib==3.7.1 +matplotlib==3.8.2 # via # catboost # pysankeybeta # seaborn # sec-certs (./../pyproject.toml) + # umap-learn matplotlib-inline==0.1.6 # via # ipykernel # ipython -mdit-py-plugins==0.3.5 - # via myst-parser +mdit-py-plugins==0.4.0 + # via + # myst-parser + # panel mdurl==0.1.2 # via markdown-it-py memory-profiler==0.61.0 @@ -248,63 +298,68 @@ multidict==6.0.4 # via # aiohttp # yarl -multiprocess==0.70.14 +multipledispatch==1.0.0 + # via datashader +multiprocess==0.70.15 # via # datasets # evaluate -murmurhash==1.0.9 +murmurhash==1.0.10 # via # preshed # spacy # thinc -mypy==1.0.0 +mypy==1.6.1 # via sec-certs (./../pyproject.toml) mypy-extensions==1.0.0 - # via - # black - # mypy -myst-nb==0.17.1 + # via mypy +myst-nb==1.0.0 # via sec-certs (./../pyproject.toml) -myst-parser==0.18.1 +myst-parser==2.0.0 # via myst-nb -nbclient==0.5.13 +nbclient==0.9.0 # via # jupyter-cache # myst-nb -nbformat==5.7.3 +nbformat==5.9.2 # via # jupyter-cache # myst-nb # nbclient -nest-asyncio==1.5.6 - # via - # ipykernel - # nbclient -networkx==3.0 +nest-asyncio==1.5.8 + # via ipykernel +networkx==3.2.1 # via + # scikit-image # sec-certs (./../pyproject.toml) # torch nltk==3.8.1 # via sentence-transformers -nodeenv==1.7.0 +nodeenv==1.8.0 # via pre-commit numba==0.58.1 # via + # datashader # pynndescent # umap-learn -numpy==1.24.2 +numpy==1.26.2 # via # blis + # bokeh # catboost # contourpy # datasets + # datashader # evaluate + # holoviews + # imageio # matplotlib # numba # optuna # pandas # pyarrow # pysankeybeta + # scikit-image # scikit-learn # scipy # seaborn @@ -313,43 +368,21 @@ numpy==1.24.2 # spacy # tabula-py # thinc + # tifffile # torchvision # transformers # umap-learn -nvidia-cublas-cu11==11.10.3.66 - # via - # nvidia-cudnn-cu11 - # nvidia-cusolver-cu11 - # torch -nvidia-cuda-cupti-cu11==11.7.101 - # via torch -nvidia-cuda-nvrtc-cu11==11.7.99 - # via torch -nvidia-cuda-runtime-cu11==11.7.99 - # via torch -nvidia-cudnn-cu11==8.5.0.96 - # via torch -nvidia-cufft-cu11==10.9.0.58 - # via torch -nvidia-curand-cu11==10.2.10.91 - # via torch -nvidia-cusolver-cu11==11.4.0.1 - # via torch -nvidia-cusparse-cu11==11.7.4.91 - # via torch -nvidia-nccl-cu11==2.14.3 - # via torch -nvidia-nvtx-cu11==11.7.91 - # via torch + # xarray optuna==3.4.0 # via sec-certs (./../pyproject.toml) -packaging==23.0 +packaging==23.2 # via - # black + # bokeh # build + # dask # datasets - # deprecation # evaluate + # holoviews # huggingface-hub # ipykernel # matplotlib @@ -357,114 +390,146 @@ packaging==23.0 # pikepdf # plotly # pydata-sphinx-theme + # pytesseract # pytest + # scikit-image # setuptools-scm # spacy # sphinx # thinc # transformers -pandas==1.5.3 + # weasel + # xarray +pandas==2.1.3 # via + # bokeh # catboost # datasets + # datashader # evaluate + # holoviews + # panel # pysankeybeta # seaborn # sec-certs (./../pyproject.toml) # tabula-py + # umap-learn + # xarray +panel==1.3.2 + # via holoviews +param==2.0.1 + # via + # datashader + # holoviews + # panel + # pyct + # pyviz-comms parso==0.8.3 # via jedi -pathspec==0.11.1 - # via black -pathy==0.10.1 - # via spacy +partd==1.4.1 + # via dask pdftotext==2.2.2 # via sec-certs (./../pyproject.toml) pexpect==4.8.0 # via ipython -pickleshare==0.7.5 - # via ipython -pikepdf==7.1.1 +pikepdf==8.7.1 # via sec-certs (./../pyproject.toml) -pillow==9.4.0 +pillow==10.1.0 # via + # bokeh + # datashader + # imageio # matplotlib # pikepdf + # pytesseract + # scikit-image # sec-certs (./../pyproject.toml) # torchvision -pip-tools==6.12.3 +pip-tools==7.3.0 # via sec-certs (./../pyproject.toml) pkgconfig==1.5.5 # via sec-certs (./../pyproject.toml) -platformdirs==3.1.1 +platformdirs==4.0.0 # via - # black # jupyter-core # virtualenv plotly==5.18.0 # via # catboost # sec-certs (./../pyproject.toml) -pluggy==1.0.0 +pluggy==1.3.0 # via pytest -pre-commit==3.1.1 +pre-commit==3.5.0 # via sec-certs (./../pyproject.toml) -preshed==3.0.8 +preshed==3.0.9 # via # spacy # thinc -prompt-toolkit==3.0.38 +prompt-toolkit==3.0.41 # via ipython -psutil==5.9.4 +psutil==5.9.6 # via # ipykernel # memory-profiler # pytest-monitor + # sec-certs (./../pyproject.toml) ptyprocess==0.7.0 # via pexpect pure-eval==0.2.2 # via stack-data -pyarrow==11.0.0 +pyarrow==14.0.1 # via datasets -pycryptodome==3.17 - # via pypdf -pydantic==1.10.6 +pyarrow-hotfix==0.6 + # via datasets +pycparser==2.21 + # via cffi +pyct==0.5.0 + # via + # colorcet + # datashader +pydantic==2.5.2 # via # confection + # pydantic-settings # sec-certs (./../pyproject.toml) # spacy # thinc -pydata-sphinx-theme==0.13.1 + # weasel +pydantic-core==2.14.5 + # via pydantic +pydantic-settings==2.1.0 + # via sec-certs (./../pyproject.toml) +pydata-sphinx-theme==0.14.3 # via sphinx-book-theme -pygments==2.14.0 +pygments==2.17.2 # via # accessible-pygments # ipython # pydata-sphinx-theme # sphinx -pynndescent==0.5.10 +pynndescent==0.5.11 # via umap-learn -pyparsing==3.0.9 +pyparsing==3.1.1 # via matplotlib -pypdf[crypto]==3.5.2 +pypdf[crypto]==3.17.1 # via # pypdf # sec-certs (./../pyproject.toml) pyproject-hooks==1.0.0 # via build -pyrsistent==0.19.3 - # via jsonschema -pysankeybeta==1.4.0 +pysankeybeta==1.4.1 + # via sec-certs (./../pyproject.toml) +pytesseract==0.3.10 # via sec-certs (./../pyproject.toml) -pytest==7.2.2 +pytest==7.4.3 # via # pytest-cov # pytest-monitor # pytest-profiling # sec-certs (./../pyproject.toml) -pytest-cov==4.0.0 +pytest-cov==4.1.0 # via sec-certs (./../pyproject.toml) -pytest-monitor==1.6.5 +pytest-monitor==1.6.6 # via sec-certs (./../pyproject.toml) pytest-profiling==1.7.0 # via sec-certs (./../pyproject.toml) @@ -474,10 +539,18 @@ python-dateutil==2.8.2 # matplotlib # pandas # sec-certs (./../pyproject.toml) -pytz==2022.7.1 +python-dotenv==1.0.0 + # via pydantic-settings +pytz==2023.3.post1 # via pandas -pyyaml==6.0 +pyviz-comms==3.0.0 + # via + # holoviews + # panel +pyyaml==6.0.1 # via + # bokeh + # dask # datasets # huggingface-hub # jupyter-cache @@ -487,22 +560,28 @@ pyyaml==6.0 # pre-commit # sec-certs (./../pyproject.toml) # transformers -pyzmq==25.0.1 +pyzmq==25.1.1 # via # ipykernel # jupyter-client -rapidfuzz==2.13.7 +rapidfuzz==3.5.2 # via sec-certs (./../pyproject.toml) -regex==2022.10.31 +referencing==0.31.0 + # via + # jsonschema + # jsonschema-specifications +regex==2023.10.3 # via # nltk # transformers -requests==2.28.2 +requests==2.31.0 # via # datasets + # datashader # evaluate # fsspec # huggingface-hub + # panel # pytest-monitor # responses # sec-certs (./../pyproject.toml) @@ -510,63 +589,71 @@ requests==2.28.2 # sphinx # torchvision # transformers + # weasel responses==0.18.0 + # via evaluate +rpds-py==0.13.1 # via - # datasets - # evaluate -ruff==0.0.239 + # jsonschema + # referencing +ruff==0.1.5 # via sec-certs (./../pyproject.toml) -scikit-learn==1.2.2 +safetensors==0.4.0 + # via transformers +scikit-image==0.22.0 + # via umap-learn +scikit-learn==1.3.2 # via # pynndescent # sec-certs (./../pyproject.toml) # sentence-transformers # umap-learn -scipy==1.10.1 +scipy==1.11.4 # via # catboost + # datashader # pynndescent + # scikit-image # scikit-learn # sec-certs (./../pyproject.toml) # sentence-transformers # umap-learn -seaborn==0.12.2 +seaborn==0.13.0 # via # pysankeybeta # sec-certs (./../pyproject.toml) + # umap-learn sentence-transformers==2.2.2 # via setfit -sentencepiece==0.1.97 +sentencepiece==0.1.99 # via sentence-transformers -setfit==0.6.0 +setfit==0.7.0 # via sec-certs (./../pyproject.toml) -setuptools-scm==7.1.0 +setuptools-scm==8.0.4 # via sec-certs (./../pyproject.toml) six==1.16.0 # via # asttokens + # bleach # catboost # html5lib - # langdetect # pytest-profiling # python-dateutil -sklearn==0.0.post11 - # via sec-certs (./../pyproject.toml) -smart-open==6.3.0 +smart-open==6.4.0 # via - # pathy # spacy + # weasel snowballstemmer==2.2.0 # via sphinx -soupsieve==2.4 +soupsieve==2.5 # via beautifulsoup4 -spacy==3.5.1 +spacy==3.7.2 # via sec-certs (./../pyproject.toml) spacy-legacy==3.0.12 # via spacy -spacy-loggers==1.0.4 +spacy-loggers==1.0.5 # via spacy -sphinx==5.3.0 +sphinx==6.2.1 # via # myst-nb # myst-parser @@ -575,76 +662,97 @@ sphinx==5.3.0 # sphinx-book-theme # sphinx-copybutton # sphinx-design -sphinx-book-theme==1.0.0 + # sphinxcontrib-applehelp + # sphinxcontrib-devhelp + # sphinxcontrib-htmlhelp + # sphinxcontrib-qthelp + # sphinxcontrib-serializinghtml +sphinx-book-theme==1.0.1 # via sec-certs (./../pyproject.toml) -sphinx-copybutton==0.5.1 +sphinx-copybutton==0.5.2 # via sec-certs (./../pyproject.toml) -sphinx-design==0.3.0 +sphinx-design==0.5.0 # via sec-certs (./../pyproject.toml) -sphinxcontrib-applehelp==1.0.4 +sphinxcontrib-applehelp==1.0.7 # via sphinx -sphinxcontrib-devhelp==1.0.2 +sphinxcontrib-devhelp==1.0.5 # via sphinx -sphinxcontrib-htmlhelp==2.0.1 +sphinxcontrib-htmlhelp==2.0.4 # via sphinx sphinxcontrib-jsmath==1.0.1 # via sphinx -sphinxcontrib-qthelp==1.0.3 +sphinxcontrib-qthelp==1.0.6 # via sphinx -sphinxcontrib-serializinghtml==1.1.5 +sphinxcontrib-serializinghtml==1.1.9 # via sphinx -sqlalchemy==1.4.46 +sqlalchemy==2.0.23 # via # alembic # jupyter-cache # optuna -srsly==2.4.6 +srsly==2.4.8 # via # confection # spacy # thinc -stack-data==0.6.2 + # weasel +stack-data==0.6.3 # via ipython -sympy==1.11.1 +sympy==1.12 # via torch -tabula-py==2.7.0 +tabula-py==2.9.0 # via sec-certs (./../pyproject.toml) tabulate==0.9.0 # via jupyter-cache -tbb==2021.10.0 - # via umap-learn tenacity==8.2.3 # via plotly -thinc==8.1.9 +thinc==8.2.1 # via spacy -threadpoolctl==3.1.0 +threadpoolctl==3.2.0 # via scikit-learn -tokenizers==0.13.2 +tifffile==2023.9.26 + # via scikit-image +tokenizers==0.15.0 # via transformers -torch==2.0.0 +tomli==2.0.1 + # via + # build + # coverage + # mypy + # pip-tools + # pyproject-hooks + # pytest + # setuptools-scm +toolz==0.12.0 + # via + # dask + # datashader + # partd +torch==2.1.1 # via # sentence-transformers # torchvision - # triton -torchvision==0.15.1 +torchvision==0.16.1 # via sentence-transformers -tornado==6.2 +tornado==6.3.3 # via + # bokeh # ipykernel # jupyter-client -tqdm==4.65.0 +tqdm==4.66.1 # via # datasets # evaluate # huggingface-hub # nltk # optuna + # panel # sec-certs (./../pyproject.toml) # sentence-transformers # spacy # transformers # umap-learn -traitlets==5.9.0 +traitlets==5.13.0 # via # comm # ipykernel @@ -655,67 +763,80 @@ traitlets==5.9.0 # matplotlib-inline # nbclient # nbformat -transformers==4.27.1 +transformers==4.35.2 # via sentence-transformers -triton==2.0.0 - # via torch -typer==0.7.0 +typer==0.9.0 # via - # pathy # spacy -types-python-dateutil==2.8.19.10 + # weasel +types-python-dateutil==2.8.19.14 # via sec-certs (./../pyproject.toml) -types-pyyaml==6.0.12.8 +types-pyyaml==6.0.12.12 # via sec-certs (./../pyproject.toml) -types-requests==2.28.11.15 +types-requests==2.31.0.10 # via sec-certs (./../pyproject.toml) -types-urllib3==1.26.25.8 - # via types-requests -typing-extensions==4.5.0 +typing-extensions==4.8.0 # via # alembic + # cloudpathlib # huggingface-hub # mypy # myst-nb - # myst-parser + # panel # pydantic + # pydantic-core + # pydata-sphinx-theme # setuptools-scm + # sqlalchemy # torch -umap-learn==0.5.4 + # typer +tzdata==2023.3 + # via pandas +uc-micro-py==1.0.2 + # via linkify-it-py +umap-learn[plot]==0.5.5 # via sec-certs (./../pyproject.toml) -urllib3==1.26.15 +urllib3==2.1.0 # via # requests # responses -virtualenv==20.21.0 + # types-requests +virtualenv==20.24.7 # via pre-commit -wasabi==1.1.1 +wasabi==1.1.2 # via # spacy # thinc -wcwidth==0.2.6 + # weasel +wcwidth==0.2.12 # via prompt-toolkit +weasel==0.3.4 + # via spacy webencodings==0.5.1 - # via html5lib -wheel==0.40.0 # via - # nvidia-cublas-cu11 - # nvidia-cuda-cupti-cu11 - # nvidia-cuda-runtime-cu11 - # nvidia-curand-cu11 - # nvidia-cusparse-cu11 - # nvidia-nvtx-cu11 + # bleach + # html5lib +wheel==0.41.3 + # via # pip-tools # pytest-monitor -widgetsnbextension==4.0.5 +widgetsnbextension==4.0.9 # via ipywidgets -xxhash==3.2.0 +wrapt==1.16.0 + # via deprecated +xarray==2023.11.0 + # via datashader +xxhash==3.4.1 # via # datasets # evaluate -yarl==1.8.2 +xyzservices==2023.10.1 + # via + # bokeh + # panel +yarl==1.9.3 # via aiohttp -zipp==3.15.0 +zipp==3.17.0 # via importlib-metadata # The following packages are considered to be unsafe in a requirements file: diff --git a/requirements/compile.sh b/requirements/compile.sh index b5b7703f..743006b2 100755 --- a/requirements/compile.sh +++ b/requirements/compile.sh @@ -2,7 +2,7 @@ # See CONTRIBUTING.md for description -pip-compile --no-header --output-file=requirements.txt ./../pyproject.toml +pip-compile --no-header -o requirements.txt ./../pyproject.toml pip-compile --no-header --extra dev -o dev_requirements.txt ./../pyproject.toml pip-compile --no-header --extra test -o test_requirements.txt ./../pyproject.toml pip-compile --no-header --extra nlp -o nlp_requirements.txt ./../pyproject.toml diff --git a/requirements/dev_requirements.txt b/requirements/dev_requirements.txt index b7c44db1..55f9d7b9 100644 --- a/requirements/dev_requirements.txt +++ b/requirements/dev_requirements.txt @@ -1,141 +1,138 @@ -aiohttp==3.8.4 +accessible-pygments==0.0.4 + # via pydata-sphinx-theme +aiohttp==3.9.0 # via # datasets # fsspec aiosignal==1.3.1 # via aiohttp -alabaster==0.7.12 +alabaster==0.7.13 # via sphinx -asttokens==2.2.1 +annotated-types==0.6.0 + # via pydantic +appnope==0.1.3 + # via + # ipykernel + # ipython +asttokens==2.4.1 # via stack-data -async-timeout==4.0.2 +async-timeout==4.0.3 # via aiohttp -attrs==22.1.0 +attrs==23.1.0 # via # aiohttp # jsonschema # jupyter-cache - # pytest -babel==2.11.0 - # via sphinx -backcall==0.2.0 - # via ipython -beautifulsoup4==4.11.1 + # referencing +babel==2.13.1 + # via + # pydata-sphinx-theme + # sphinx +beautifulsoup4==4.12.2 # via # pydata-sphinx-theme # sec-certs (./../pyproject.toml) -black==23.1.0 - # via sec-certs (./../pyproject.toml) -blis==0.7.9 +blis==0.7.11 # via thinc -build==0.9.0 +build==1.0.3 # via pip-tools -catalogue==2.0.8 +catalogue==2.0.10 # via # spacy # srsly # thinc -certifi==2023.7.22 +certifi==2023.11.17 # via requests -cfgv==3.3.1 +cffi==1.16.0 + # via cryptography +cfgv==3.4.0 # via pre-commit -charset-normalizer==2.1.1 - # via - # aiohttp - # requests -click==8.1.3 +charset-normalizer==3.3.2 + # via requests +click==8.1.7 # via # jupyter-cache - # nltk # pip-tools # sec-certs (./../pyproject.toml) # typer -cmake==3.27.7 - # via triton -comm==0.1.2 - # via ipykernel -confection==0.0.3 - # via thinc -contourpy==1.0.6 - # via matplotlib -coverage[toml]==6.5.0 +cloudpathlib==0.16.0 + # via weasel +comm==0.2.0 # via - # coverage - # pytest-cov + # ipykernel + # ipywidgets +confection==0.1.3 + # via + # thinc + # weasel +contourpy==1.2.0 + # via matplotlib +coverage[toml]==7.3.2 # via # coverage # pytest-cov -cycler==0.11.0 +cryptography==41.0.5 + # via pypdf +cycler==0.12.1 # via matplotlib -cymem==2.0.7 +cymem==2.0.8 # via # preshed # spacy # thinc -datasets==2.9.0 - # via - # evaluate - # sec-certs (./../pyproject.toml) - # setfit -debugpy==1.6.4 +datasets==2.15.0 + # via sec-certs (./../pyproject.toml) +debugpy==1.8.0 # via ipykernel decorator==5.1.1 # via ipython -deprecation==2.1.0 +deprecated==1.2.14 # via pikepdf -dill==0.3.6 +dill==0.3.7 # via # datasets - # evaluate # multiprocess -distlib==0.3.6 +distlib==0.3.7 # via virtualenv distro==1.8.0 # via tabula-py -docutils==0.17.1 +docutils==0.19 # via # myst-parser # pydata-sphinx-theme # sphinx -entrypoints==0.4 - # via jupyter-client -evaluate==0.4.0 - # via setfit -executing==1.2.0 +exceptiongroup==1.2.0 + # via + # ipython + # pytest +executing==2.0.1 # via stack-data -fastjsonschema==2.16.2 +fastjsonschema==2.19.0 # via nbformat -filelock==3.8.2 +filelock==3.13.1 # via # huggingface-hub - # torch - # transformers - # triton # virtualenv -fonttools==4.38.0 +fonttools==4.45.0 # via matplotlib -frozenlist==1.3.3 +frozenlist==1.4.0 # via # aiohttp # aiosignal -fsspec[http]==2023.1.0 +fsspec[http]==2023.10.0 # via # datasets - # evaluate # fsspec + # huggingface-hub gprof2dot==2022.7.29 # via pytest-profiling -greenlet==2.0.1 +greenlet==3.0.1 # via sqlalchemy html5lib==1.1 # via sec-certs (./../pyproject.toml) -huggingface-hub==0.12.1 - # via - # datasets - # evaluate - # sentence-transformers - # transformers -identify==2.5.9 +huggingface-hub==0.19.4 + # via datasets +identify==2.5.32 # via pre-commit idna==3.4 # via @@ -143,72 +140,68 @@ idna==3.4 # yarl imagesize==1.4.1 # via sphinx -importlib-metadata==5.1.0 +importlib-metadata==6.8.0 # via # jupyter-cache # myst-nb -iniconfig==1.1.1 +iniconfig==2.0.0 # via pytest -ipykernel==6.19.1 +ipykernel==6.27.0 # via - # ipywidgets # myst-nb # sec-certs (./../pyproject.toml) -ipython==8.10.0 +ipython==8.17.2 # via # ipykernel # ipywidgets # myst-nb # sec-certs (./../pyproject.toml) -ipywidgets==8.0.3 +ipywidgets==8.1.1 # via sec-certs (./../pyproject.toml) -jedi==0.18.2 +jedi==0.19.1 # via ipython jinja2==3.1.2 # via # myst-parser # spacy # sphinx - # torch -joblib==1.2.0 - # via - # nltk - # scikit-learn -jsonschema==4.17.3 +joblib==1.3.2 + # via scikit-learn +jsonschema==4.20.0 # via # nbformat # sec-certs (./../pyproject.toml) -jupyter-cache==0.5.0 +jsonschema-specifications==2023.11.1 + # via jsonschema +jupyter-cache==1.0.0 # via myst-nb -jupyter-client==7.4.8 +jupyter-client==8.6.0 # via # ipykernel # nbclient -jupyter-core==5.1.0 +jupyter-core==5.5.0 # via + # ipykernel # jupyter-client + # nbclient # nbformat -jupyterlab-widgets==3.0.4 +jupyterlab-widgets==3.0.9 # via ipywidgets -kiwisolver==1.4.4 +kiwisolver==1.4.5 # via matplotlib langcodes==3.3.0 # via spacy -langdetect==1.0.9 - # via sec-certs (./../pyproject.toml) -lit==17.0.3 - # via triton -lxml==4.9.1 +lxml==4.9.3 # via # pikepdf # sec-certs (./../pyproject.toml) -markdown-it-py==2.2.0 +markdown-it-py==3.0.0 # via # mdit-py-plugins # myst-parser -markupsafe==2.1.1 +markupsafe==2.1.3 # via jinja2 -matplotlib==3.6.2 +matplotlib==3.8.2 # via # pysankeybeta # seaborn @@ -217,23 +210,19 @@ matplotlib-inline==0.1.6 # via # ipykernel # ipython -mdit-py-plugins==0.3.3 +mdit-py-plugins==0.4.0 # via myst-parser mdurl==0.1.2 # via markdown-it-py memory-profiler==0.61.0 # via pytest-monitor -mpmath==1.3.0 - # via sympy multidict==6.0.4 # via # aiohttp # yarl -multiprocess==0.70.14 - # via - # datasets - # evaluate -murmurhash==1.0.9 +multiprocess==0.70.15 + # via datasets +murmurhash==1.0.10 # via # preshed # spacy @@ -242,38 +231,30 @@ mypy==1.6.1 # via sec-certs (./../pyproject.toml) mypy-extensions==1.0.0 # via mypy -myst-nb==0.17.1 +myst-nb==1.0.0 # via sec-certs (./../pyproject.toml) -myst-parser==0.18.1 +myst-parser==2.0.0 # via myst-nb -nbclient==0.5.13 +nbclient==0.9.0 # via # jupyter-cache # myst-nb -nbformat==5.7.0 +nbformat==5.9.2 # via # jupyter-cache # myst-nb # nbclient -nest-asyncio==1.5.6 - # via - # ipykernel - # jupyter-client - # nbclient -networkx==2.8.8 - # via - # sec-certs (./../pyproject.toml) - # torch -nltk==3.8.1 - # via sentence-transformers -nodeenv==1.7.0 +nest-asyncio==1.5.8 + # via ipykernel +networkx==3.2.1 + # via sec-certs (./../pyproject.toml) +nodeenv==1.8.0 # via pre-commit -numpy==1.23.5 +numpy==1.26.2 # via # blis # contourpy # datasets - # evaluate # matplotlib # pandas # pyarrow @@ -282,43 +263,13 @@ numpy==1.23.5 # scipy # seaborn # sec-certs (./../pyproject.toml) - # sentence-transformers # spacy # tabula-py # thinc - # torchvision - # transformers -nvidia-cublas-cu11==11.10.3.66 - # via - # nvidia-cudnn-cu11 - # nvidia-cusolver-cu11 - # torch -nvidia-cuda-cupti-cu11==11.7.101 - # via torch -nvidia-cuda-nvrtc-cu11==11.7.99 - # via torch -nvidia-cuda-runtime-cu11==11.7.99 - # via torch -nvidia-cudnn-cu11==8.5.0.96 - # via torch -nvidia-cufft-cu11==10.9.0.58 - # via torch -nvidia-curand-cu11==10.2.10.91 - # via torch -nvidia-cusolver-cu11==11.4.0.1 - # via torch -nvidia-cusparse-cu11==11.7.4.91 - # via torch -nvidia-nccl-cu11==2.14.3 - # via torch -nvidia-nvtx-cu11==11.7.91 - # via torch -packaging==22.0 +packaging==23.2 # via # build # datasets - # deprecation - # evaluate # huggingface-hub # ipykernel # matplotlib @@ -329,55 +280,48 @@ packaging==22.0 # setuptools-scm # spacy # sphinx - # transformers -pandas==1.5.2 + # thinc + # weasel +pandas==2.1.3 # via # datasets - # evaluate # pysankeybeta # seaborn # sec-certs (./../pyproject.toml) # tabula-py parso==0.8.3 # via jedi -pathy==0.10.1 - # via spacy pdftotext==2.2.2 # via sec-certs (./../pyproject.toml) -pep517==0.13.0 - # via build pexpect==4.8.0 # via ipython -pickleshare==0.7.5 - # via ipython -pikepdf==6.2.5 +pikepdf==8.7.1 # via sec-certs (./../pyproject.toml) -pillow==10.0.1 +pillow==10.1.0 # via # matplotlib # pikepdf # pytesseract # sec-certs (./../pyproject.toml) - # torchvision -pip-tools==6.11.0 +pip-tools==7.3.0 # via sec-certs (./../pyproject.toml) pkgconfig==1.5.5 # via sec-certs (./../pyproject.toml) -platformdirs==2.6.0 +platformdirs==4.0.0 # via # jupyter-core # virtualenv -pluggy==1.0.0 +pluggy==1.3.0 # via pytest -pre-commit==2.20.0 +pre-commit==3.5.0 # via sec-certs (./../pyproject.toml) -preshed==3.0.8 +preshed==3.0.9 # via # spacy # thinc -prompt-toolkit==3.0.36 +prompt-toolkit==3.0.41 # via ipython -psutil==5.9.4 +psutil==5.9.6 # via # ipykernel # memory-profiler @@ -387,43 +331,53 @@ ptyprocess==0.7.0 # via pexpect pure-eval==0.2.2 # via stack-data -pyarrow==11.0.0 +pyarrow==14.0.1 # via datasets -pycryptodome==3.16.0 - # via pypdf -pydantic==1.10.2 +pyarrow-hotfix==0.6 + # via datasets +pycparser==2.21 + # via cffi +pydantic==2.5.2 # via # confection + # pydantic-settings # sec-certs (./../pyproject.toml) # spacy # thinc -pydata-sphinx-theme==0.8.1 + # weasel +pydantic-core==2.14.5 + # via pydantic +pydantic-settings==2.1.0 + # via sec-certs (./../pyproject.toml) +pydata-sphinx-theme==0.14.3 # via sphinx-book-theme -pygments==2.15.0 +pygments==2.17.2 # via + # accessible-pygments # ipython + # pydata-sphinx-theme # sphinx -pyparsing==3.0.9 +pyparsing==3.1.1 # via matplotlib -pypdf[crypto]==3.2.1 +pypdf[crypto]==3.17.1 # via # pypdf # sec-certs (./../pyproject.toml) -pyrsistent==0.19.2 - # via jsonschema -pysankeybeta==1.4.0 +pyproject-hooks==1.0.0 + # via build +pysankeybeta==1.4.1 # via sec-certs (./../pyproject.toml) pytesseract==0.3.10 # via sec-certs (./../pyproject.toml) -pytest==7.2.0 +pytest==7.4.3 # via # pytest-cov # pytest-monitor # pytest-profiling # sec-certs (./../pyproject.toml) -pytest-cov==4.0.0 +pytest-cov==4.1.0 # via sec-certs (./../pyproject.toml) -pytest-monitor==1.6.5 +pytest-monitor==1.6.6 # via sec-certs (./../pyproject.toml) pytest-profiling==1.7.0 # via sec-certs (./../pyproject.toml) @@ -433,11 +387,11 @@ python-dateutil==2.8.2 # matplotlib # pandas # sec-certs (./../pyproject.toml) -pytz==2022.6 - # via - # babel - # pandas -pyyaml==6.0 +python-dotenv==1.0.0 + # via pydantic-settings +pytz==2023.3.post1 + # via pandas +pyyaml==6.0.1 # via # datasets # huggingface-hub @@ -446,78 +400,65 @@ pyyaml==6.0 # myst-parser # pre-commit # sec-certs (./../pyproject.toml) - # sphinx-book-theme - # transformers -pyzmq==24.0.1 +pyzmq==25.1.1 # via # ipykernel # jupyter-client -rapidfuzz==2.13.3 +rapidfuzz==3.5.2 # via sec-certs (./../pyproject.toml) -regex==2023.6.3 +referencing==0.31.0 # via - # nltk - # transformers + # jsonschema + # jsonschema-specifications requests==2.31.0 # via # datasets - # evaluate # fsspec # huggingface-hub # pytest-monitor - # responses # sec-certs (./../pyproject.toml) # spacy # sphinx - # torchvision - # transformers -responses==0.18.0 + # weasel +rpds-py==0.13.1 # via - # datasets - # evaluate -ruff==0.0.239 + # jsonschema + # referencing +ruff==0.1.5 # via sec-certs (./../pyproject.toml) -scikit-learn==1.2.0 - # via - # sec-certs (./../pyproject.toml) - # sentence-transformers -scipy==1.10.0 +scikit-learn==1.3.2 + # via sec-certs (./../pyproject.toml) +scipy==1.11.4 # via # scikit-learn # sec-certs (./../pyproject.toml) - # sentence-transformers -seaborn==0.12.1 +seaborn==0.13.0 # via # pysankeybeta # sec-certs (./../pyproject.toml) -sentence-transformers==2.2.2 - # via setfit -sentencepiece==0.1.97 - # via sentence-transformers -setfit==0.6.0 - # via sec-certs (./../pyproject.toml) -setuptools-scm==7.0.5 +setuptools-scm==8.0.4 # via sec-certs (./../pyproject.toml) six==1.16.0 # via # asttokens # html5lib - # langdetect # pytest-profiling # python-dateutil -smart-open==6.2.0 - # via pathy +smart-open==6.4.0 + # via + # spacy + # weasel snowballstemmer==2.2.0 # via sphinx -soupsieve==2.3.2.post1 +soupsieve==2.5 # via beautifulsoup4 -spacy==3.4.3 +spacy==3.7.2 # via sec-certs (./../pyproject.toml) -spacy-legacy==3.0.10 +spacy-legacy==3.0.12 # via spacy -spacy-loggers==1.0.4 +spacy-loggers==1.0.5 # via spacy -sphinx==4.5.0 +sphinx==6.2.1 # via # myst-nb # myst-parser @@ -526,71 +467,67 @@ sphinx==4.5.0 # sphinx-book-theme # sphinx-copybutton # sphinx-design -sphinx-book-theme==0.3.3 + # sphinxcontrib-applehelp + # sphinxcontrib-devhelp + # sphinxcontrib-htmlhelp + # sphinxcontrib-qthelp + # sphinxcontrib-serializinghtml +sphinx-book-theme==1.0.1 # via sec-certs (./../pyproject.toml) -sphinx-copybutton==0.5.1 +sphinx-copybutton==0.5.2 # via sec-certs (./../pyproject.toml) -sphinx-design==0.3.0 +sphinx-design==0.5.0 # via sec-certs (./../pyproject.toml) -sphinxcontrib-applehelp==1.0.2 +sphinxcontrib-applehelp==1.0.7 # via sphinx -sphinxcontrib-devhelp==1.0.2 +sphinxcontrib-devhelp==1.0.5 # via sphinx -sphinxcontrib-htmlhelp==2.0.0 +sphinxcontrib-htmlhelp==2.0.4 # via sphinx sphinxcontrib-jsmath==1.0.1 # via sphinx -sphinxcontrib-qthelp==1.0.3 +sphinxcontrib-qthelp==1.0.6 # via sphinx -sphinxcontrib-serializinghtml==1.1.5 +sphinxcontrib-serializinghtml==1.1.9 # via sphinx -sqlalchemy==1.4.44 +sqlalchemy==2.0.23 # via jupyter-cache -srsly==2.4.5 +srsly==2.4.8 # via # confection # spacy # thinc -stack-data==0.6.2 + # weasel +stack-data==0.6.3 # via ipython -sympy==1.11.1 - # via torch -tabula-py==2.6.0 +tabula-py==2.9.0 # via sec-certs (./../pyproject.toml) tabulate==0.9.0 # via jupyter-cache -thinc==8.1.5 +thinc==8.2.1 # via spacy -threadpoolctl==3.1.0 +threadpoolctl==3.2.0 # via scikit-learn -tokenizers==0.13.2 - # via transformers -toml==0.10.2 - # via pre-commit tomli==2.0.1 - # via setuptools-scm -torch==2.0.1 # via - # sentence-transformers - # torchvision - # triton -torchvision==0.15.2 - # via sentence-transformers -tornado==6.3.2 + # build + # coverage + # mypy + # pip-tools + # pyproject-hooks + # pytest + # setuptools-scm +tornado==6.3.3 # via # ipykernel # jupyter-client -tqdm==4.64.1 +tqdm==4.66.1 # via # datasets - # evaluate # huggingface-hub - # nltk # sec-certs (./../pyproject.toml) - # sentence-transformers # spacy - # transformers -traitlets==5.6.0 +traitlets==5.13.0 # via # comm # ipykernel @@ -601,64 +538,60 @@ traitlets==5.6.0 # matplotlib-inline # nbclient # nbformat -transformers==4.27.1 - # via sentence-transformers -triton==2.0.0 - # via torch -typer==0.7.0 +typer==0.9.0 # via - # pathy # spacy -types-python-dateutil==2.8.19.4 + # weasel +types-python-dateutil==2.8.19.14 # via sec-certs (./../pyproject.toml) -types-pyyaml==6.0.12.2 +types-pyyaml==6.0.12.12 # via sec-certs (./../pyproject.toml) -types-requests==2.28.11.5 +types-requests==2.31.0.10 # via sec-certs (./../pyproject.toml) -types-urllib3==1.26.25.4 - # via types-requests -typing-extensions==4.4.0 +typing-extensions==4.8.0 # via + # cloudpathlib # huggingface-hub # mypy # myst-nb - # myst-parser # pydantic + # pydantic-core + # pydata-sphinx-theme # setuptools-scm - # torch -urllib3==1.26.13 + # sqlalchemy + # typer +tzdata==2023.3 + # via pandas +urllib3==2.1.0 # via # requests - # responses -virtualenv==20.17.1 + # types-requests +virtualenv==20.24.7 # via pre-commit -wasabi==0.10.1 +wasabi==1.1.2 # via # spacy # thinc -wcwidth==0.2.5 + # weasel +wcwidth==0.2.12 # via prompt-toolkit +weasel==0.3.4 + # via spacy webencodings==0.5.1 # via html5lib -wheel==0.38.4 +wheel==0.41.3 # via - # nvidia-cublas-cu11 - # nvidia-cuda-cupti-cu11 - # nvidia-cuda-runtime-cu11 - # nvidia-curand-cu11 - # nvidia-cusparse-cu11 - # nvidia-nvtx-cu11 # pip-tools # pytest-monitor -widgetsnbextension==4.0.4 +widgetsnbextension==4.0.9 # via ipywidgets -xxhash==3.2.0 - # via - # datasets - # evaluate -yarl==1.8.2 +wrapt==1.16.0 + # via deprecated +xxhash==3.4.1 + # via datasets +yarl==1.9.3 # via aiohttp -zipp==3.11.0 +zipp==3.17.0 # via importlib-metadata # The following packages are considered to be unsafe in a requirements file: diff --git a/requirements/nlp_requirements.txt b/requirements/nlp_requirements.txt index dd5366b6..d9d25188 100644 --- a/requirements/nlp_requirements.txt +++ b/requirements/nlp_requirements.txt @@ -1,4 +1,4 @@ -aiohttp==3.8.6 +aiohttp==3.9.0 # via # datasets # fsspec @@ -8,6 +8,10 @@ alembic==1.12.1 # via optuna annotated-types==0.6.0 # via pydantic +appnope==0.1.3 + # via + # ipykernel + # ipython asttokens==2.4.1 # via stack-data async-timeout==4.0.3 @@ -19,8 +23,14 @@ attrs==23.1.0 # referencing beautifulsoup4==4.12.2 # via sec-certs (./../pyproject.toml) +bleach==6.1.0 + # via panel blis==0.7.11 # via thinc +bokeh==3.3.1 + # via + # panel + # umap-learn catalogue==2.0.10 # via # spacy @@ -28,21 +38,27 @@ catalogue==2.0.10 # thinc catboost==1.2.2 # via sec-certs (./../pyproject.toml) -certifi==2023.7.22 +certifi==2023.11.17 # via requests cffi==1.16.0 # via cryptography charset-normalizer==3.3.2 - # via - # aiohttp - # requests + # via requests click==8.1.7 # via + # dask # nltk # sec-certs (./../pyproject.toml) # typer cloudpathlib==0.16.0 # via weasel +cloudpickle==3.0.0 + # via dask +colorcet==3.0.1 + # via + # datashader + # holoviews + # umap-learn colorlog==6.7.0 # via optuna comm==0.2.0 @@ -54,7 +70,9 @@ confection==0.1.3 # thinc # weasel contourpy==1.2.0 - # via matplotlib + # via + # bokeh + # matplotlib cryptography==41.0.5 # via pypdf cycler==0.12.1 @@ -64,10 +82,14 @@ cymem==2.0.8 # preshed # spacy # thinc -datasets==2.14.6 +dask==2023.11.0 + # via datashader +datasets==2.15.0 # via # evaluate # setfit +datashader==0.16.0 + # via umap-learn debugpy==1.8.0 # via ipykernel decorator==5.1.1 @@ -83,6 +105,8 @@ distro==1.8.0 # via tabula-py evaluate==0.4.1 # via setfit +exceptiongroup==1.2.0 + # via ipython executing==2.0.1 # via stack-data filelock==3.13.1 @@ -90,8 +114,7 @@ filelock==3.13.1 # huggingface-hub # torch # transformers - # triton -fonttools==4.44.0 +fonttools==4.45.0 # via matplotlib frozenlist==1.4.0 # via @@ -99,6 +122,7 @@ frozenlist==1.4.0 # aiosignal fsspec[http]==2023.10.0 # via + # dask # datasets # evaluate # fsspec @@ -108,9 +132,11 @@ graphviz==0.20.1 # via catboost greenlet==3.0.1 # via sqlalchemy +holoviews==1.18.1 + # via umap-learn html5lib==1.1 # via sec-certs (./../pyproject.toml) -huggingface-hub==0.17.3 +huggingface-hub==0.19.4 # via # datasets # evaluate @@ -121,7 +147,11 @@ idna==3.4 # via # requests # yarl -ipykernel==6.26.0 +imageio==2.33.0 + # via scikit-image +importlib-metadata==6.8.0 + # via dask +ipykernel==6.27.0 # via sec-certs (./../pyproject.toml) ipython==8.17.2 # via @@ -133,6 +163,7 @@ jedi==0.19.1 # via ipython jinja2==3.1.2 # via + # bokeh # spacy # torch joblib==1.3.2 @@ -140,11 +171,9 @@ joblib==1.3.2 # nltk # pynndescent # scikit-learn -jpype1==1.4.1 - # via tabula-py -jsonschema==4.19.2 +jsonschema==4.20.0 # via sec-certs (./../pyproject.toml) -jsonschema-specifications==2023.7.1 +jsonschema-specifications==2023.11.1 # via jsonschema jupyter-client==8.6.0 # via ipykernel @@ -158,38 +187,55 @@ kiwisolver==1.4.5 # via matplotlib langcodes==3.3.0 # via spacy -langdetect==1.0.9 - # via sec-certs (./../pyproject.toml) +lazy-loader==0.3 + # via scikit-image +linkify-it-py==2.0.2 + # via panel llvmlite==0.41.1 # via # numba # pynndescent +locket==1.0.0 + # via partd lxml==4.9.3 # via # pikepdf # sec-certs (./../pyproject.toml) mako==1.3.0 # via alembic +markdown==3.5.1 + # via panel +markdown-it-py==3.0.0 + # via + # mdit-py-plugins + # panel markupsafe==2.1.3 # via # jinja2 # mako -matplotlib==3.8.1 +matplotlib==3.8.2 # via # catboost # pysankeybeta # seaborn # sec-certs (./../pyproject.toml) + # umap-learn matplotlib-inline==0.1.6 # via # ipykernel # ipython +mdit-py-plugins==0.4.0 + # via panel +mdurl==0.1.2 + # via markdown-it-py mpmath==1.3.0 # via sympy multidict==6.0.4 # via # aiohttp # yarl +multipledispatch==1.0.0 + # via datashader multiprocess==0.70.15 # via # datasets @@ -203,27 +249,34 @@ nest-asyncio==1.5.8 # via ipykernel networkx==3.2.1 # via + # scikit-image # sec-certs (./../pyproject.toml) # torch nltk==3.8.1 # via sentence-transformers numba==0.58.1 # via + # datashader # pynndescent # umap-learn numpy==1.26.2 # via # blis + # bokeh # catboost # contourpy # datasets + # datashader # evaluate + # holoviews + # imageio # matplotlib # numba # optuna # pandas # pyarrow # pysankeybeta + # scikit-image # scikit-learn # scipy # seaborn @@ -232,69 +285,62 @@ numpy==1.26.2 # spacy # tabula-py # thinc + # tifffile # torchvision # transformers # umap-learn -nvidia-cublas-cu12==12.1.3.1 - # via - # nvidia-cudnn-cu12 - # nvidia-cusolver-cu12 - # torch -nvidia-cuda-cupti-cu12==12.1.105 - # via torch -nvidia-cuda-nvrtc-cu12==12.1.105 - # via torch -nvidia-cuda-runtime-cu12==12.1.105 - # via torch -nvidia-cudnn-cu12==8.9.2.26 - # via torch -nvidia-cufft-cu12==11.0.2.54 - # via torch -nvidia-curand-cu12==10.3.2.106 - # via torch -nvidia-cusolver-cu12==11.4.5.107 - # via torch -nvidia-cusparse-cu12==12.1.0.106 - # via - # nvidia-cusolver-cu12 - # torch -nvidia-nccl-cu12==2.18.1 - # via torch -nvidia-nvjitlink-cu12==12.3.52 - # via - # nvidia-cusolver-cu12 - # nvidia-cusparse-cu12 -nvidia-nvtx-cu12==12.1.105 - # via torch + # xarray optuna==3.4.0 # via sec-certs (./../pyproject.toml) packaging==23.2 # via + # bokeh + # dask # datasets # evaluate + # holoviews # huggingface-hub # ipykernel - # jpype1 # matplotlib # optuna # pikepdf # plotly + # pytesseract + # scikit-image # setuptools-scm # spacy # thinc # transformers # weasel + # xarray pandas==2.1.3 # via + # bokeh # catboost # datasets + # datashader # evaluate + # holoviews + # panel # pysankeybeta # seaborn # sec-certs (./../pyproject.toml) # tabula-py + # umap-learn + # xarray +panel==1.3.2 + # via holoviews +param==2.0.1 + # via + # datashader + # holoviews + # panel + # pyct + # pyviz-comms parso==0.8.3 # via jedi +partd==1.4.1 + # via dask pdftotext==2.2.2 # via sec-certs (./../pyproject.toml) pexpect==4.8.0 @@ -303,8 +349,13 @@ pikepdf==8.7.1 # via sec-certs (./../pyproject.toml) pillow==10.1.0 # via + # bokeh + # datashader + # imageio # matplotlib # pikepdf + # pytesseract + # scikit-image # sec-certs (./../pyproject.toml) # torchvision pkgconfig==1.5.5 @@ -319,30 +370,41 @@ preshed==3.0.9 # via # spacy # thinc -prompt-toolkit==3.0.40 +prompt-toolkit==3.0.41 # via ipython psutil==5.9.6 - # via ipykernel + # via + # ipykernel + # sec-certs (./../pyproject.toml) ptyprocess==0.7.0 # via pexpect pure-eval==0.2.2 # via stack-data pyarrow==14.0.1 # via datasets +pyarrow-hotfix==0.6 + # via datasets pycparser==2.21 # via cffi -pydantic==2.5.0 +pyct==0.5.0 + # via + # colorcet + # datashader +pydantic==2.5.2 # via # confection + # pydantic-settings # sec-certs (./../pyproject.toml) # spacy # thinc # weasel -pydantic-core==2.14.1 +pydantic-core==2.14.5 # via pydantic -pygments==2.16.1 +pydantic-settings==2.1.0 + # via sec-certs (./../pyproject.toml) +pygments==2.17.2 # via ipython -pynndescent==0.5.10 +pynndescent==0.5.11 # via umap-learn pyparsing==3.1.1 # via matplotlib @@ -352,16 +414,26 @@ pypdf[crypto]==3.17.1 # sec-certs (./../pyproject.toml) pysankeybeta==1.4.1 # via sec-certs (./../pyproject.toml) +pytesseract==0.3.10 + # via sec-certs (./../pyproject.toml) python-dateutil==2.8.2 # via # jupyter-client # matplotlib # pandas # sec-certs (./../pyproject.toml) +python-dotenv==1.0.0 + # via pydantic-settings pytz==2023.3.post1 # via pandas +pyviz-comms==3.0.0 + # via + # holoviews + # panel pyyaml==6.0.1 # via + # bokeh + # dask # datasets # huggingface-hub # optuna @@ -373,7 +445,7 @@ pyzmq==25.1.1 # jupyter-client rapidfuzz==3.5.2 # via sec-certs (./../pyproject.toml) -referencing==0.30.2 +referencing==0.31.0 # via # jsonschema # jsonschema-specifications @@ -384,9 +456,11 @@ regex==2023.10.3 requests==2.31.0 # via # datasets + # datashader # evaluate # fsspec # huggingface-hub + # panel # responses # sec-certs (./../pyproject.toml) # spacy @@ -395,22 +469,26 @@ requests==2.31.0 # weasel responses==0.18.0 # via evaluate -rpds-py==0.12.0 +rpds-py==0.13.1 # via # jsonschema # referencing safetensors==0.4.0 # via transformers +scikit-image==0.22.0 + # via umap-learn scikit-learn==1.3.2 # via # pynndescent # sec-certs (./../pyproject.toml) # sentence-transformers # umap-learn -scipy==1.11.3 +scipy==1.11.4 # via # catboost + # datashader # pynndescent + # scikit-image # scikit-learn # sec-certs (./../pyproject.toml) # sentence-transformers @@ -419,6 +497,7 @@ seaborn==0.13.0 # via # pysankeybeta # sec-certs (./../pyproject.toml) + # umap-learn sentence-transformers==2.2.2 # via setfit sentencepiece==0.1.99 @@ -430,12 +509,10 @@ setuptools-scm==8.0.4 six==1.16.0 # via # asttokens + # bleach # catboost # html5lib - # langdetect # python-dateutil -sklearn==0.0.post11 - # via sec-certs (./../pyproject.toml) smart-open==6.4.0 # via # spacy @@ -462,26 +539,34 @@ stack-data==0.6.3 # via ipython sympy==1.12 # via torch -tabula-py==2.8.2 +tabula-py==2.9.0 # via sec-certs (./../pyproject.toml) -tbb==2021.10.0 - # via umap-learn tenacity==8.2.3 # via plotly thinc==8.2.1 # via spacy threadpoolctl==3.2.0 # via scikit-learn -tokenizers==0.14.1 +tifffile==2023.9.26 + # via scikit-image +tokenizers==0.15.0 # via transformers -torch==2.1.0 +tomli==2.0.1 + # via setuptools-scm +toolz==0.12.0 + # via + # dask + # datashader + # partd +torch==2.1.1 # via # sentence-transformers # torchvision -torchvision==0.16.0 +torchvision==0.16.1 # via sentence-transformers tornado==6.3.3 # via + # bokeh # ipykernel # jupyter-client tqdm==4.66.1 @@ -491,6 +576,7 @@ tqdm==4.66.1 # huggingface-hub # nltk # optuna + # panel # sec-certs (./../pyproject.toml) # sentence-transformers # spacy @@ -505,10 +591,8 @@ traitlets==5.13.0 # jupyter-client # jupyter-core # matplotlib-inline -transformers==4.35.0 +transformers==4.35.2 # via sentence-transformers -triton==2.1.0 - # via torch typer==0.9.0 # via # spacy @@ -516,7 +600,9 @@ typer==0.9.0 typing-extensions==4.8.0 # via # alembic + # cloudpathlib # huggingface-hub + # panel # pydantic # pydantic-core # setuptools-scm @@ -525,7 +611,9 @@ typing-extensions==4.8.0 # typer tzdata==2023.3 # via pandas -umap-learn==0.5.4 +uc-micro-py==1.0.2 + # via linkify-it-py +umap-learn[plot]==0.5.5 # via sec-certs (./../pyproject.toml) urllib3==2.1.0 # via @@ -536,22 +624,32 @@ wasabi==1.1.2 # spacy # thinc # weasel -wcwidth==0.2.10 +wcwidth==0.2.12 # via prompt-toolkit weasel==0.3.4 # via spacy webencodings==0.5.1 - # via html5lib + # via + # bleach + # html5lib widgetsnbextension==4.0.9 # via ipywidgets wrapt==1.16.0 # via deprecated +xarray==2023.11.0 + # via datashader xxhash==3.4.1 # via # datasets # evaluate -yarl==1.9.2 +xyzservices==2023.10.1 + # via + # bokeh + # panel +yarl==1.9.3 # via aiohttp +zipp==3.17.0 + # via importlib-metadata # The following packages are considered to be unsafe in a requirements file: # setuptools diff --git a/requirements/requirements.txt b/requirements/requirements.txt index d13f9505..0b370634 100644 --- a/requirements/requirements.txt +++ b/requirements/requirements.txt @@ -1,150 +1,110 @@ -aiohttp==3.8.4 +annotated-types==0.6.0 + # via pydantic +appnope==0.1.3 # via - # datasets - # fsspec -aiosignal==1.3.1 - # via aiohttp -asttokens==2.2.1 + # ipykernel + # ipython +asttokens==2.4.1 # via stack-data -async-timeout==4.0.2 - # via aiohttp -attrs==22.1.0 +attrs==23.1.0 # via - # aiohttp # jsonschema -backcall==0.2.0 - # via ipython -beautifulsoup4==4.11.1 + # referencing +beautifulsoup4==4.12.2 # via sec-certs (./../pyproject.toml) -blis==0.7.9 +blis==0.7.11 # via thinc -catalogue==2.0.8 +catalogue==2.0.10 # via # spacy # srsly # thinc -certifi==2023.7.22 +certifi==2023.11.17 # via requests -charset-normalizer==2.1.1 - # via - # aiohttp - # requests -click==8.1.3 +cffi==1.16.0 + # via cryptography +charset-normalizer==3.3.2 + # via requests +click==8.1.7 # via - # nltk # sec-certs (./../pyproject.toml) # typer -cmake==3.27.7 - # via triton -comm==0.1.2 - # via ipykernel -confection==0.0.3 - # via thinc -contourpy==1.0.6 +cloudpathlib==0.16.0 + # via weasel +comm==0.2.0 + # via + # ipykernel + # ipywidgets +confection==0.1.3 + # via + # thinc + # weasel +contourpy==1.2.0 # via matplotlib -cycler==0.11.0 +cryptography==41.0.5 + # via pypdf +cycler==0.12.1 # via matplotlib -cymem==2.0.7 +cymem==2.0.8 # via # preshed # spacy # thinc -datasets==2.12.0 - # via - # evaluate - # setfit -debugpy==1.6.4 +debugpy==1.8.0 # via ipykernel decorator==5.1.1 # via ipython -deprecation==2.1.0 +deprecated==1.2.14 # via pikepdf -dill==0.3.6 - # via - # datasets - # evaluate - # multiprocess distro==1.8.0 # via tabula-py -entrypoints==0.4 - # via jupyter-client -evaluate==0.4.0 - # via setfit -executing==1.2.0 +exceptiongroup==1.2.0 + # via ipython +executing==2.0.1 # via stack-data -filelock==3.12.0 - # via - # huggingface-hub - # torch - # transformers - # triton -fonttools==4.38.0 +fonttools==4.45.0 # via matplotlib -frozenlist==1.3.3 - # via - # aiohttp - # aiosignal -fsspec[http]==2023.5.0 - # via - # datasets - # evaluate - # fsspec - # huggingface-hub html5lib==1.1 # via sec-certs (./../pyproject.toml) -huggingface-hub==0.15.1 - # via - # datasets - # evaluate - # sentence-transformers - # transformers idna==3.4 - # via - # requests - # yarl -ipykernel==6.19.1 - # via - # ipywidgets - # sec-certs (./../pyproject.toml) -ipython==8.10.0 + # via requests +ipykernel==6.27.0 + # via sec-certs (./../pyproject.toml) +ipython==8.17.2 # via # ipykernel # ipywidgets -ipywidgets==8.0.3 +ipywidgets==8.1.1 # via sec-certs (./../pyproject.toml) -jedi==0.18.2 +jedi==0.19.1 # via ipython jinja2==3.1.2 - # via - # spacy - # torch -joblib==1.2.0 - # via - # nltk - # scikit-learn -jsonschema==4.17.3 + # via spacy +joblib==1.3.2 + # via scikit-learn +jsonschema==4.20.0 # via sec-certs (./../pyproject.toml) -jupyter-client==7.4.8 +jsonschema-specifications==2023.11.1 + # via jsonschema +jupyter-client==8.6.0 # via ipykernel -jupyter-core==5.1.0 - # via jupyter-client -jupyterlab-widgets==3.0.4 +jupyter-core==5.5.0 + # via + # ipykernel + # jupyter-client +jupyterlab-widgets==3.0.9 # via ipywidgets -kiwisolver==1.4.4 +kiwisolver==1.4.5 # via matplotlib langcodes==3.3.0 # via spacy -langdetect==1.0.9 - # via sec-certs (./../pyproject.toml) -lit==17.0.3 - # via triton -lxml==4.9.1 +lxml==4.9.3 # via # pikepdf # sec-certs (./../pyproject.toml) -markupsafe==2.1.1 +markupsafe==2.1.3 # via jinja2 -matplotlib==3.6.2 +matplotlib==3.8.2 # via # pysankeybeta # seaborn @@ -153,127 +113,70 @@ matplotlib-inline==0.1.6 # via # ipykernel # ipython -mpmath==1.3.0 - # via sympy -multidict==6.0.4 - # via - # aiohttp - # yarl -multiprocess==0.70.14 - # via - # datasets - # evaluate -murmurhash==1.0.9 +murmurhash==1.0.10 # via # preshed # spacy # thinc -nest-asyncio==1.5.6 - # via - # ipykernel - # jupyter-client -networkx==2.8.8 - # via - # sec-certs (./../pyproject.toml) - # torch -nltk==3.8.1 - # via sentence-transformers -numpy==1.23.5 +nest-asyncio==1.5.8 + # via ipykernel +networkx==3.2.1 + # via sec-certs (./../pyproject.toml) +numpy==1.26.2 # via # blis # contourpy - # datasets - # evaluate # matplotlib # pandas - # pyarrow # pysankeybeta # scikit-learn # scipy # seaborn # sec-certs (./../pyproject.toml) - # sentence-transformers # spacy # tabula-py # thinc - # torchvision - # transformers -nvidia-cublas-cu11==11.10.3.66 +packaging==23.2 # via - # nvidia-cudnn-cu11 - # nvidia-cusolver-cu11 - # torch -nvidia-cuda-cupti-cu11==11.7.101 - # via torch -nvidia-cuda-nvrtc-cu11==11.7.99 - # via torch -nvidia-cuda-runtime-cu11==11.7.99 - # via torch -nvidia-cudnn-cu11==8.5.0.96 - # via torch -nvidia-cufft-cu11==10.9.0.58 - # via torch -nvidia-curand-cu11==10.2.10.91 - # via torch -nvidia-cusolver-cu11==11.4.0.1 - # via torch -nvidia-cusparse-cu11==11.7.4.91 - # via torch -nvidia-nccl-cu11==2.14.3 - # via torch -nvidia-nvtx-cu11==11.7.91 - # via torch -packaging==22.0 - # via - # datasets - # deprecation - # evaluate - # huggingface-hub # ipykernel # matplotlib # pikepdf # pytesseract # setuptools-scm # spacy - # transformers -pandas==1.5.2 + # thinc + # weasel +pandas==2.1.3 # via - # datasets - # evaluate # pysankeybeta # seaborn # sec-certs (./../pyproject.toml) # tabula-py parso==0.8.3 # via jedi -pathy==0.10.1 - # via spacy pdftotext==2.2.2 # via sec-certs (./../pyproject.toml) pexpect==4.8.0 # via ipython -pickleshare==0.7.5 - # via ipython -pikepdf==6.2.5 +pikepdf==8.7.1 # via sec-certs (./../pyproject.toml) -pillow==10.0.1 +pillow==10.1.0 # via # matplotlib # pikepdf # pytesseract # sec-certs (./../pyproject.toml) - # torchvision pkgconfig==1.5.5 # via sec-certs (./../pyproject.toml) -platformdirs==2.6.0 +platformdirs==4.0.0 # via jupyter-core -preshed==3.0.8 +preshed==3.0.9 # via # spacy # thinc -prompt-toolkit==3.0.36 +prompt-toolkit==3.0.41 # via ipython -psutil==5.9.4 +psutil==5.9.6 # via # ipykernel # sec-certs (./../pyproject.toml) @@ -281,30 +184,29 @@ ptyprocess==0.7.0 # via pexpect pure-eval==0.2.2 # via stack-data -pyarrow==12.0.0 - # via datasets -pycryptodome==3.16.0 - # via pypdf -pydantic==1.10.2 +pycparser==2.21 + # via cffi +pydantic==2.5.2 # via # confection + # pydantic-settings # sec-certs (./../pyproject.toml) # spacy # thinc -pygments==2.15.0 + # weasel +pydantic-core==2.14.5 + # via pydantic +pydantic-settings==2.1.0 + # via sec-certs (./../pyproject.toml) +pygments==2.17.2 # via ipython -pyparsing==3.0.9 +pyparsing==3.1.1 # via matplotlib -pypdf[crypto]==3.2.1 +pypdf[crypto]==3.17.1 # via # pypdf # sec-certs (./../pyproject.toml) - # via - # pypdf - # sec-certs (./../pyproject.toml) -pyrsistent==0.19.2 - # via jsonschema -pysankeybeta==1.4.0 +pysankeybeta==1.4.1 # via sec-certs (./../pyproject.toml) pytesseract==0.3.10 # via sec-certs (./../pyproject.toml) @@ -314,117 +216,85 @@ python-dateutil==2.8.2 # matplotlib # pandas # sec-certs (./../pyproject.toml) -pytz==2022.6 +python-dotenv==1.0.0 + # via pydantic-settings +pytz==2023.3.post1 # via pandas -pyyaml==6.0 - # via - # datasets - # huggingface-hub - # sec-certs (./../pyproject.toml) - # transformers -pyzmq==24.0.1 +pyyaml==6.0.1 + # via sec-certs (./../pyproject.toml) +pyzmq==25.1.1 # via # ipykernel # jupyter-client -rapidfuzz==2.13.3 +rapidfuzz==3.5.2 # via sec-certs (./../pyproject.toml) -regex==2023.6.3 +referencing==0.31.0 # via - # nltk - # transformers + # jsonschema + # jsonschema-specifications requests==2.31.0 # via - # datasets - # evaluate - # fsspec - # huggingface-hub - # responses # sec-certs (./../pyproject.toml) # spacy - # torchvision - # transformers -responses==0.18.0 + # weasel +rpds-py==0.13.1 # via - # datasets - # evaluate -scikit-learn==1.2.0 - # via - # sec-certs (./../pyproject.toml) - # sentence-transformers -scipy==1.10.0 + # jsonschema + # referencing +scikit-learn==1.3.2 + # via sec-certs (./../pyproject.toml) +scipy==1.11.4 # via # scikit-learn # sec-certs (./../pyproject.toml) - # sentence-transformers -seaborn==0.12.1 +seaborn==0.13.0 # via # pysankeybeta # sec-certs (./../pyproject.toml) -sentence-transformers==2.2.2 - # via setfit -sentencepiece==0.1.99 - # via sentence-transformers -setfit==0.7.0 - # via sec-certs (./../pyproject.toml) -setuptools-scm==7.0.5 +setuptools-scm==8.0.4 # via sec-certs (./../pyproject.toml) six==1.16.0 # via # asttokens # html5lib - # langdetect # python-dateutil -smart-open==6.2.0 - # via pathy -soupsieve==2.3.2.post1 +smart-open==6.4.0 + # via + # spacy + # weasel +soupsieve==2.5 # via beautifulsoup4 -spacy==3.4.3 +spacy==3.7.2 # via sec-certs (./../pyproject.toml) -spacy-legacy==3.0.10 +spacy-legacy==3.0.12 # via spacy -spacy-loggers==1.0.4 +spacy-loggers==1.0.5 # via spacy -srsly==2.4.5 +srsly==2.4.8 # via # confection # spacy # thinc -stack-data==0.6.2 + # weasel +stack-data==0.6.3 # via ipython -sympy==1.12 - # via torch -tabula-py==2.6.0 +tabula-py==2.9.0 # via sec-certs (./../pyproject.toml) -thinc==8.1.5 +thinc==8.2.1 # via spacy -threadpoolctl==3.1.0 +threadpoolctl==3.2.0 # via scikit-learn -tokenizers==0.13.3 - # via transformers tomli==2.0.1 # via setuptools-scm -torch==2.0.1 - # via - # sentence-transformers - # torchvision - # triton -torchvision==0.15.2 - # via sentence-transformers -tornado==6.3.2 +tornado==6.3.3 # via # ipykernel # jupyter-client -tqdm==4.64.1 +tqdm==4.66.1 # via - # datasets - # evaluate - # huggingface-hub - # nltk # sec-certs (./../pyproject.toml) - # sentence-transformers # spacy - # transformers -traitlets==5.6.0 +traitlets==5.13.0 # via # comm # ipykernel @@ -433,48 +303,36 @@ traitlets==5.6.0 # jupyter-client # jupyter-core # matplotlib-inline -transformers==4.29.2 - # via sentence-transformers -triton==2.0.0 - # via torch -typer==0.7.0 +typer==0.9.0 # via - # pathy # spacy -typing-extensions==4.4.0 + # weasel +typing-extensions==4.8.0 # via - # huggingface-hub + # cloudpathlib # pydantic + # pydantic-core # setuptools-scm - # torch -urllib3==1.26.13 - # via - # requests - # responses -wasabi==0.10.1 + # typer +tzdata==2023.3 + # via pandas +urllib3==2.1.0 + # via requests +wasabi==1.1.2 # via # spacy # thinc -wcwidth==0.2.5 + # weasel +wcwidth==0.2.12 # via prompt-toolkit +weasel==0.3.4 + # via spacy webencodings==0.5.1 # via html5lib -wheel==0.41.2 - # via - # nvidia-cublas-cu11 - # nvidia-cuda-cupti-cu11 - # nvidia-cuda-runtime-cu11 - # nvidia-curand-cu11 - # nvidia-cusparse-cu11 - # nvidia-nvtx-cu11 -widgetsnbextension==4.0.4 +widgetsnbextension==4.0.9 # via ipywidgets -xxhash==3.2.0 - # via - # datasets - # evaluate -yarl==1.9.2 - # via aiohttp +wrapt==1.16.0 + # via deprecated # The following packages are considered to be unsafe in a requirements file: # setuptools diff --git a/requirements/test_requirements.txt b/requirements/test_requirements.txt index 6a599469..6dde2c98 100644 --- a/requirements/test_requirements.txt +++ b/requirements/test_requirements.txt @@ -1,157 +1,118 @@ -aiohttp==3.8.4 +annotated-types==0.6.0 + # via pydantic +appnope==0.1.3 # via - # datasets - # fsspec -aiosignal==1.3.1 - # via aiohttp -asttokens==2.2.1 + # ipykernel + # ipython +asttokens==2.4.1 # via stack-data -async-timeout==4.0.2 - # via aiohttp -attrs==22.1.0 +attrs==23.1.0 # via - # aiohttp # jsonschema - # pytest -backcall==0.2.0 - # via ipython -beautifulsoup4==4.11.1 + # referencing +beautifulsoup4==4.12.2 # via sec-certs (./../pyproject.toml) -blis==0.7.9 +blis==0.7.11 # via thinc -catalogue==2.0.8 +catalogue==2.0.10 # via # spacy # srsly # thinc -certifi==2023.7.22 +certifi==2023.11.17 # via requests -charset-normalizer==2.1.1 - # via - # aiohttp - # requests -click==8.1.3 +cffi==1.16.0 + # via cryptography +charset-normalizer==3.3.2 + # via requests +click==8.1.7 # via - # nltk # sec-certs (./../pyproject.toml) # typer -cmake==3.27.7 - # via triton -comm==0.1.2 - # via ipykernel -confection==0.0.3 - # via thinc -contourpy==1.0.6 +cloudpathlib==0.16.0 + # via weasel +comm==0.2.0 + # via + # ipykernel + # ipywidgets +confection==0.1.3 + # via + # thinc + # weasel +contourpy==1.2.0 # via matplotlib -coverage[toml]==6.5.0 +coverage[toml]==7.3.2 # via # pytest-cov # sec-certs (./../pyproject.toml) -cycler==0.11.0 +cryptography==41.0.5 + # via pypdf +cycler==0.12.1 # via matplotlib -cymem==2.0.7 +cymem==2.0.8 # via # preshed # spacy # thinc -datasets==2.12.0 - # via - # evaluate - # setfit -debugpy==1.6.4 +debugpy==1.8.0 # via ipykernel decorator==5.1.1 # via ipython -deprecation==2.1.0 +deprecated==1.2.14 # via pikepdf -dill==0.3.6 - # via - # datasets - # evaluate - # multiprocess distro==1.8.0 # via tabula-py -entrypoints==0.4 - # via jupyter-client -evaluate==0.4.0 - # via setfit -executing==1.2.0 - # via stack-data -filelock==3.12.0 +exceptiongroup==1.2.0 # via - # huggingface-hub - # torch - # transformers - # triton -fonttools==4.38.0 + # ipython + # pytest +executing==2.0.1 + # via stack-data +fonttools==4.45.0 # via matplotlib -frozenlist==1.3.3 - # via - # aiohttp - # aiosignal -fsspec[http]==2023.5.0 - # via - # datasets - # evaluate - # fsspec - # huggingface-hub html5lib==1.1 # via sec-certs (./../pyproject.toml) -huggingface-hub==0.15.1 - # via - # datasets - # evaluate - # sentence-transformers - # transformers idna==3.4 - # via - # requests - # yarl -iniconfig==1.1.1 + # via requests +iniconfig==2.0.0 # via pytest -ipykernel==6.19.1 - # via - # ipywidgets - # sec-certs (./../pyproject.toml) -ipython==8.10.0 +ipykernel==6.27.0 + # via sec-certs (./../pyproject.toml) +ipython==8.17.2 # via # ipykernel # ipywidgets -ipywidgets==8.0.3 +ipywidgets==8.1.1 # via sec-certs (./../pyproject.toml) -jedi==0.18.2 +jedi==0.19.1 # via ipython jinja2==3.1.2 - # via - # spacy - # torch -joblib==1.2.0 - # via - # nltk - # scikit-learn -jsonschema==4.17.3 + # via spacy +joblib==1.3.2 + # via scikit-learn +jsonschema==4.20.0 # via sec-certs (./../pyproject.toml) -jupyter-client==7.4.8 +jsonschema-specifications==2023.11.1 + # via jsonschema +jupyter-client==8.6.0 # via ipykernel -jupyter-core==5.1.0 - # via jupyter-client -jupyterlab-widgets==3.0.4 +jupyter-core==5.5.0 + # via + # ipykernel + # jupyter-client +jupyterlab-widgets==3.0.9 # via ipywidgets -kiwisolver==1.4.4 +kiwisolver==1.4.5 # via matplotlib langcodes==3.3.0 # via spacy -langdetect==1.0.9 - # via sec-certs (./../pyproject.toml) -lit==17.0.3 - # via triton -lxml==4.9.1 +lxml==4.9.3 # via # pikepdf # sec-certs (./../pyproject.toml) -markupsafe==2.1.1 +markupsafe==2.1.3 # via jinja2 -matplotlib==3.6.2 +matplotlib==3.8.2 # via # pysankeybeta # seaborn @@ -160,82 +121,31 @@ matplotlib-inline==0.1.6 # via # ipykernel # ipython -mpmath==1.3.0 - # via sympy -multidict==6.0.4 - # via - # aiohttp - # yarl -multiprocess==0.70.14 - # via - # datasets - # evaluate -murmurhash==1.0.9 +murmurhash==1.0.10 # via # preshed # spacy # thinc -nest-asyncio==1.5.6 - # via - # ipykernel - # jupyter-client -networkx==2.8.8 - # via - # sec-certs (./../pyproject.toml) - # torch -nltk==3.8.1 - # via sentence-transformers -numpy==1.23.5 +nest-asyncio==1.5.8 + # via ipykernel +networkx==3.2.1 + # via sec-certs (./../pyproject.toml) +numpy==1.26.2 # via # blis # contourpy - # datasets - # evaluate # matplotlib # pandas - # pyarrow # pysankeybeta # scikit-learn # scipy # seaborn # sec-certs (./../pyproject.toml) - # sentence-transformers # spacy # tabula-py # thinc - # torchvision - # transformers -nvidia-cublas-cu11==11.10.3.66 - # via - # nvidia-cudnn-cu11 - # nvidia-cusolver-cu11 - # torch -nvidia-cuda-cupti-cu11==11.7.101 - # via torch -nvidia-cuda-nvrtc-cu11==11.7.99 - # via torch -nvidia-cuda-runtime-cu11==11.7.99 - # via torch -nvidia-cudnn-cu11==8.5.0.96 - # via torch -nvidia-cufft-cu11==10.9.0.58 - # via torch -nvidia-curand-cu11==10.2.10.91 - # via torch -nvidia-cusolver-cu11==11.4.0.1 - # via torch -nvidia-cusparse-cu11==11.7.4.91 - # via torch -nvidia-nccl-cu11==2.14.3 - # via torch -nvidia-nvtx-cu11==11.7.91 - # via torch -packaging==22.0 +packaging==23.2 # via - # datasets - # deprecation - # evaluate - # huggingface-hub # ipykernel # matplotlib # pikepdf @@ -243,47 +153,41 @@ packaging==22.0 # pytest # setuptools-scm # spacy - # transformers -pandas==1.5.2 + # thinc + # weasel +pandas==2.1.3 # via - # datasets - # evaluate # pysankeybeta # seaborn # sec-certs (./../pyproject.toml) # tabula-py parso==0.8.3 # via jedi -pathy==0.10.1 - # via spacy pdftotext==2.2.2 # via sec-certs (./../pyproject.toml) pexpect==4.8.0 # via ipython -pickleshare==0.7.5 - # via ipython -pikepdf==6.2.5 +pikepdf==8.7.1 # via sec-certs (./../pyproject.toml) -pillow==10.0.1 +pillow==10.1.0 # via # matplotlib # pikepdf # pytesseract # sec-certs (./../pyproject.toml) - # torchvision pkgconfig==1.5.5 # via sec-certs (./../pyproject.toml) -platformdirs==2.6.0 +platformdirs==4.0.0 # via jupyter-core -pluggy==1.0.0 +pluggy==1.3.0 # via pytest -preshed==3.0.8 +preshed==3.0.9 # via # spacy # thinc -prompt-toolkit==3.0.36 +prompt-toolkit==3.0.41 # via ipython -psutil==5.9.4 +psutil==5.9.6 # via # ipykernel # sec-certs (./../pyproject.toml) @@ -291,35 +195,37 @@ ptyprocess==0.7.0 # via pexpect pure-eval==0.2.2 # via stack-data -pyarrow==12.0.0 - # via datasets -pycryptodome==3.16.0 - # via pypdf -pydantic==1.10.2 +pycparser==2.21 + # via cffi +pydantic==2.5.2 # via # confection + # pydantic-settings # sec-certs (./../pyproject.toml) # spacy # thinc -pygments==2.15.0 + # weasel +pydantic-core==2.14.5 + # via pydantic +pydantic-settings==2.1.0 + # via sec-certs (./../pyproject.toml) +pygments==2.17.2 # via ipython -pyparsing==3.0.9 +pyparsing==3.1.1 # via matplotlib -pypdf[crypto]==3.2.1 +pypdf[crypto]==3.17.1 # via # pypdf # sec-certs (./../pyproject.toml) -pyrsistent==0.19.2 - # via jsonschema -pysankeybeta==1.4.0 +pysankeybeta==1.4.1 # via sec-certs (./../pyproject.toml) pytesseract==0.3.10 # via sec-certs (./../pyproject.toml) -pytest==7.2.0 +pytest==7.4.3 # via # pytest-cov # sec-certs (./../pyproject.toml) -pytest-cov==4.0.0 +pytest-cov==4.1.0 # via sec-certs (./../pyproject.toml) python-dateutil==2.8.2 # via @@ -327,117 +233,88 @@ python-dateutil==2.8.2 # matplotlib # pandas # sec-certs (./../pyproject.toml) -pytz==2022.6 +python-dotenv==1.0.0 + # via pydantic-settings +pytz==2023.3.post1 # via pandas -pyyaml==6.0 - # via - # datasets - # huggingface-hub - # sec-certs (./../pyproject.toml) - # transformers -pyzmq==24.0.1 +pyyaml==6.0.1 + # via sec-certs (./../pyproject.toml) +pyzmq==25.1.1 # via # ipykernel # jupyter-client -rapidfuzz==2.13.3 +rapidfuzz==3.5.2 # via sec-certs (./../pyproject.toml) -regex==2023.6.3 +referencing==0.31.0 # via - # nltk - # transformers + # jsonschema + # jsonschema-specifications requests==2.31.0 # via - # datasets - # evaluate - # fsspec - # huggingface-hub - # responses # sec-certs (./../pyproject.toml) # spacy - # torchvision - # transformers -responses==0.18.0 + # weasel +rpds-py==0.13.1 # via - # datasets - # evaluate -scikit-learn==1.2.0 - # via - # sec-certs (./../pyproject.toml) - # sentence-transformers -scipy==1.10.0 + # jsonschema + # referencing +scikit-learn==1.3.2 + # via sec-certs (./../pyproject.toml) +scipy==1.11.4 # via # scikit-learn # sec-certs (./../pyproject.toml) - # sentence-transformers -seaborn==0.12.1 +seaborn==0.13.0 # via # pysankeybeta # sec-certs (./../pyproject.toml) -sentence-transformers==2.2.2 - # via setfit -sentencepiece==0.1.99 - # via sentence-transformers -setfit==0.7.0 - # via sec-certs (./../pyproject.toml) -setuptools-scm==7.0.5 +setuptools-scm==8.0.4 # via sec-certs (./../pyproject.toml) six==1.16.0 # via # asttokens # html5lib - # langdetect # python-dateutil -smart-open==6.2.0 - # via pathy -soupsieve==2.3.2.post1 +smart-open==6.4.0 + # via + # spacy + # weasel +soupsieve==2.5 # via beautifulsoup4 -spacy==3.4.3 +spacy==3.7.2 # via sec-certs (./../pyproject.toml) -spacy-legacy==3.0.10 +spacy-legacy==3.0.12 # via spacy -spacy-loggers==1.0.4 +spacy-loggers==1.0.5 # via spacy -srsly==2.4.5 +srsly==2.4.8 # via # confection # spacy # thinc -stack-data==0.6.2 + # weasel +stack-data==0.6.3 # via ipython -sympy==1.12 - # via torch -tabula-py==2.6.0 +tabula-py==2.9.0 # via sec-certs (./../pyproject.toml) -thinc==8.1.5 +thinc==8.2.1 # via spacy -threadpoolctl==3.1.0 +threadpoolctl==3.2.0 # via scikit-learn -tokenizers==0.13.3 - # via transformers tomli==2.0.1 - # via setuptools-scm -torch==2.0.1 # via - # sentence-transformers - # torchvision - # triton -torchvision==0.15.2 - # via sentence-transformers -tornado==6.3.2 + # coverage + # pytest + # setuptools-scm +tornado==6.3.3 # via # ipykernel # jupyter-client -tqdm==4.64.1 +tqdm==4.66.1 # via - # datasets - # evaluate - # huggingface-hub - # nltk # sec-certs (./../pyproject.toml) - # sentence-transformers # spacy - # transformers -traitlets==5.6.0 +traitlets==5.13.0 # via # comm # ipykernel @@ -446,48 +323,36 @@ traitlets==5.6.0 # jupyter-client # jupyter-core # matplotlib-inline -transformers==4.29.2 - # via sentence-transformers -triton==2.0.0 - # via torch -typer==0.7.0 +typer==0.9.0 # via - # pathy # spacy -typing-extensions==4.4.0 + # weasel +typing-extensions==4.8.0 # via - # huggingface-hub + # cloudpathlib # pydantic + # pydantic-core # setuptools-scm - # torch -urllib3==1.26.13 - # via - # requests - # responses -wasabi==0.10.1 + # typer +tzdata==2023.3 + # via pandas +urllib3==2.1.0 + # via requests +wasabi==1.1.2 # via # spacy # thinc -wcwidth==0.2.5 + # weasel +wcwidth==0.2.12 # via prompt-toolkit +weasel==0.3.4 + # via spacy webencodings==0.5.1 # via html5lib -wheel==0.41.2 - # via - # nvidia-cublas-cu11 - # nvidia-cuda-cupti-cu11 - # nvidia-cuda-runtime-cu11 - # nvidia-curand-cu11 - # nvidia-cusparse-cu11 - # nvidia-nvtx-cu11 -widgetsnbextension==4.0.4 +widgetsnbextension==4.0.9 # via ipywidgets -xxhash==3.2.0 - # via - # datasets - # evaluate -yarl==1.9.2 - # via aiohttp +wrapt==1.16.0 + # via deprecated # The following packages are considered to be unsafe in a requirements file: # setuptools |