Fix errors in switch to absolute imports

- Move entry point `process_certificates.py` to root directory
- Move entry point `fils_certificates.py` to root directory
- Do corresponding changes in setup.py

1 files changed, 259 insertions, 0 deletions

diff --git a/process_certificates.py b/process_certificates.py
new file mode 100755
index 00000000..143c6be2
--- /dev/null
+++ b/process_certificates.py
@@ -0,0 +1,259 @@
+#!/usr/bin/env python3
+
+import click
+from sec_certs.files import load_json_files
+from sec_certs.extract_certificates import *
+from sec_certs.analyze_certificates import *
+from sec_certs.download import download_cc_web, download_cc
+
+
+@click.command()
+@click.argument("directory", required=True, type=str)
+@click.option("--fresh", "do_complete_extraction", is_flag=True, help="Whether to extract from a fresh state.")
+@click.option("--do-download-meta", "do_download_meta", is_flag=True, help="Whether to download meta pages.")
+@click.option("--do-extraction-meta", "do_extraction_meta", is_flag=True, help="Whether to extract information from the meta pages.")
+@click.option("--do-download-certs", "do_download_certs", is_flag=True, help="Whether to download certs.")
+@click.option("--do-pdftotext", "do_pdftotext", is_flag=True, help="Whether to perform pdftotext conversion of the certs.")
+@click.option("--do-extraction", "do_extraction_certs", is_flag=True, help="Whether to extract information from the certs.")
+@click.option("--do-pairing", "do_pairing", is_flag=True, help="Whether to pair PP stuff.")
+@click.option("--do-processing", "do_processing", is_flag=True, help="Whether to process certificates.")
+@click.option("--do-analysis", "do_analysis", is_flag=True, help="Whether to analyse certificates.")
+@click.option("-t", "--threads", "threads", type=int, default=4, help="Amount of threads to use.")
+def main(directory, do_complete_extraction: bool, do_download_meta: bool, do_extraction_meta: bool,
+         do_download_certs: bool, do_pdftotext: bool, do_extraction_certs: bool,
+         do_pairing: bool, do_processing: bool, do_analysis: bool, threads: int):
+    directory = Path(directory)
+
+    web_dir = directory / "web"
+    walk_dir = directory / "certs"
+    certs_dir = walk_dir / "certs"
+    targets_dir = walk_dir / "targets"
+    pp_dir = directory / "pp"
+    fragments_dir = directory / "cert_fragments"
+    pp_fragments_dir = directory / "pp_fragments"
+    results_dir = directory / "results"
+
+    web_dir.mkdir(parents=True, exist_ok=True)
+    walk_dir.mkdir(parents=True, exist_ok=True)
+    certs_dir.mkdir(parents=True, exist_ok=True)
+    targets_dir.mkdir(parents=True, exist_ok=True)
+    pp_dir.mkdir(parents=True, exist_ok=True)
+    fragments_dir.mkdir(parents=True, exist_ok=True)
+    pp_fragments_dir.mkdir(parents=True, exist_ok=True)
+    results_dir.mkdir(parents=True, exist_ok=True)
+
+    #
+    # Start processing
+    #
+    do_analysis_filtered = False
+
+    if do_complete_extraction:
+        # analyze all files from scratch, set 'previous' state to empty dict
+        prev_csv = {}
+        prev_html = {}
+        prev_download = []
+        prev_front = {}
+        prev_keywords = {}
+        prev_pdf_meta = {}
+    else:
+        # load previously analyzed results
+        prev_csv, prev_html, prev_download, prev_front, prev_keywords, prev_pdf_meta = load_json_files(
+            map(lambda x: results_dir / x, ['certificate_data_csv_all.json',
+                                            'certificate_data_html_all.json',
+                                            'certificate_data_download_all.json',
+                                            'certificate_data_frontpage_all.json',
+                                            'certificate_data_keywords_all.json',
+                                            'certificate_data_pdfmeta_all.json']))
+
+    if do_download_meta:
+        download_cc_web(web_dir, threads)
+
+        # NOTE: Code below is preparation for differetian download of only new certificates
+        # - unfinished now
+        # print('*** Items: {} vs. {}'.format(len(current_html.keys()), len(prev_html.keys())))
+        # current_html_keys = sorted(current_html.keys())
+        # prev_html_keys = sorted(prev_html.keys())
+        # new_items = list(set(current_html.keys()) - set(prev_html.keys()))
+        # print('*** New items detected: {}'.format(len(new_items)))
+        #
+        # # find new items which are not yet processed based on the value of raw csv line
+        # new_items = []
+        # for current_item_key in current_csv.keys():
+        #     current_item = current_csv[current_item_key]
+        #     current_raw_csv = current_item['csv_scan']['raw_csv_line']
+        #     match_found = False
+        #     for prev_item_key in prev_csv.keys():
+        #         prev_item = prev_csv[prev_item_key]
+        #         prev_raw_csv = prev_item['csv_scan']['raw_csv_line']
+        #         if current_raw_csv == prev_raw_csv:
+        #             match_found = True
+        #             break
+        #     if not match_found:
+        #         # we found new item
+        #         new_items.append(current_item_key)
+        #
+        # print('*** New items detected: {}'.format(len(new_items)))
+
+    if do_extraction_meta:
+        all_csv = extract_certificates_csv(web_dir)
+        all_html, certs, updates = extract_certificates_html(web_dir)
+
+        with open(results_dir / "certificate_data_csv_all.json", "w") as write_file:
+            json.dump(all_csv, write_file, indent=4, sort_keys=True)
+        with open(results_dir / "certificate_data_html_all.json", "w") as write_file:
+            json.dump(all_html, write_file, indent=4, sort_keys=True)
+        with open(results_dir / "certificate_data_download_all.json", "w") as write_file:
+            json.dump(certs + updates, write_file, indent=4, sort_keys=True)
+
+    if do_download_certs:
+        all_download = load_json_files([results_dir / "certificate_data_download_all.json"])
+        download_cc(walk_dir, all_download[0], threads)
+
+    if do_pdftotext:
+        convert_pdf_files(walk_dir, threads, ["-raw"])
+
+    if do_extraction_certs:
+        all_front = extract_certificates_frontpage(walk_dir)
+        all_keywords = extract_certificates_keywords(walk_dir, fragments_dir, 'certificate')
+        all_pdf_meta = extract_certificates_pdfmeta(walk_dir, 'certificate', results_dir)
+
+        # save joined results
+        with open(results_dir / "certificate_data_frontpage_all.json", "w") as write_file:
+            json.dump(all_front,  write_file, indent=4, sort_keys=True)
+        with open(results_dir / "certificate_data_keywords_all.json", "w") as write_file:
+            json.dump(all_keywords,  write_file, indent=4, sort_keys=True)
+        with open(results_dir / "certificate_data_pdfmeta_all.json", "w") as write_file:
+            json.dump(all_pdf_meta,  write_file, indent=4, sort_keys=True)
+
+    # if do_extraction_pp:
+    #     all_pp_csv = extract_protectionprofiles_csv(web_dir)
+    #     all_pp_front = extract_protectionprofiles_frontpage(pp_dir)
+    #     all_pp_keywords = extract_certificates_keywords(pp_dir, pp_fragments_dir, 'pp')
+    #    all_pp_pdf_meta = extract_certificates_pdfmeta(pp_dir, 'pp')
+    #
+    #     # save joined results
+    #     with open("pp_data_csv_all.json", "w") as write_file:
+    #         write_file.write(json.dumps(all_pp_csv, indent=4, sort_keys=True))
+    #     with open("pp_data_frontpage_all.json", "w") as write_file:
+    #         write_file.write(json.dumps(all_pp_front, indent=4, sort_keys=True))
+    #     with open("pp_data_keywords_all.json", "w") as write_file:
+    #         write_file.write(json.dumps(all_pp_keywords, indent=4, sort_keys=True))
+    #     with open("pp_data_pdfmeta_all.json", "w") as write_file:
+    #         write_file.write(json.dumps(all_pp_pdf_meta, indent=4, sort_keys=True))
+
+    if do_pairing:
+        # # PROTECTION PROFILES
+        # # load results from previous step
+        # all_pp_csv, all_pp_front, all_pp_keywords, all_pp_pdf_meta = load_json_files(
+        #     ['pp_data_csv_all.json', 'pp_data_frontpage_all.json',
+        #      'pp_data_keywords_all.json', 'pp_data_pdfmeta_all.json'])
+        # # check for unexpected results
+        # check_expected_pp_results({}, all_pp_csv, {}, all_pp_keywords)
+        # # collate all results into single file
+        # all_pp_items = collate_certificates_data({}, all_pp_csv, all_pp_front, all_pp_keywords, all_pp_pdf_meta, 'link_pp_document')
+        # # write collated result
+        # with open("pp_data_complete.json", "w") as write_file:
+        #     write_file.write(json.dumps(all_pp_items, indent=4, sort_keys=True))
+
+        # CERTIFICATES
+        # load results from previous step
+        all_csv, all_html, all_front, all_keywords, all_pdf_meta = load_json_files(
+            map(lambda x: results_dir / x, ['certificate_data_csv_all.json',
+                                            'certificate_data_html_all.json',
+                                            'certificate_data_frontpage_all.json',
+                                            'certificate_data_keywords_all.json',
+                                            'certificate_data_pdfmeta_all.json']))
+        # check for unexpected results
+        check_expected_cert_results(all_html, all_csv, all_front, all_keywords, all_pdf_meta)
+        # collate all results into single file
+        all_cert_items = collate_certificates_data(all_html, all_csv, all_front, all_keywords, all_pdf_meta, 'link_security_target')
+
+        # write collated result
+        with open(results_dir / "certificate_data_complete.json", "w") as write_file:
+            json.dump(all_cert_items, write_file, indent=4, sort_keys=True)
+
+    if do_processing:
+        # load information about protection profiles as extracted by sec-certs-pp tool
+        with open(results_dir / 'pp_data_complete_processed.json') as json_file:
+            all_pp_items = json.load(json_file)
+
+        with open(results_dir / 'certificate_data_complete.json') as json_file:
+            all_cert_items = json.load(json_file)
+
+        all_cert_items = process_certificates_data(all_cert_items, all_pp_items)
+
+        with open(results_dir / "certificate_data_complete_processed.json", "w") as write_file:
+            json.dump(all_cert_items, write_file, indent=4, sort_keys=True)
+
+    if do_analysis:
+        with open(results_dir / 'certificate_data_complete_processed.json') as json_file:
+            all_cert_items = json.load(json_file)
+
+        if do_analysis_filtered:
+            # analyze only smartcards
+            do_analysis_only_filtered(all_cert_items, results_dir,
+                                      ['csv_scan', 'cc_category'], 'ICs, Smart Cards and Smart Card-Related Devices and Systems')
+            # analyze only operating systems
+            do_analysis_only_filtered(all_cert_items, results_dir,
+                                      ['csv_scan', 'cc_category'], 'Operating Systems')
+
+            # analyze separate manufacturers
+            do_analysis_manufacturers(all_cert_items, results_dir)
+
+            # archived on 09/01/2019
+            do_analysis_09_01_2019_archival(all_cert_items, results_dir)
+
+        # analyze all certificates together
+        do_analysis_everything(all_cert_items, results_dir)
+
+        with open(results_dir / "certificate_data_complete_processed_analyzed.json", "w") as write_file:
+            json.dump(all_cert_items, write_file, indent=4, sort_keys=True)
+
+
+if __name__ == "__main__":
+    main()
+
+
+    # TODO
+    # add saving of logs into file
+    # include parsing from protection profiles repo
+    # add differential partial download of new files only + processing + combine
+      # generate download script only for new files (need to have previous version of files stored)
+      # option for extraction of info just for single file?
+      # allow for late extraction of keywords (only newly added regexes)
+      # extraction of keywords done with the provided cert_rules_dict => cert_rules.py and cert_rules_new.py
+      # detect archival of certificates
+    # add tests - few selected files
+    # add detection of overly long regex matches
+    # add analysis of target CC version
+    # extract even more pdf file metadata https://github.com/pdfminer/pdfminer.six
+    # protection profiles dependency graph similarly as certid dependency graph is done
+    # If None == protection profile => Match PP with its assurance level and recompute
+    # extract info about protection profiles, download and parse pdf, map to referencing files
+    # analysis of PP only: which PP is the most popular?, what schemes/countries are doing most...
+    # analysis of certificates in time (per year) (different schemes)
+    # how many certificates are extended? How many times
+    # analysis of use of protection profiles
+    # analysis of security targets documents
+    # analysis of big cert clusters
+    # improve logging (info, warnings, errors, final summary)
+      # save as json, named segments (start_segment('name'), end_segment('name'), print('log_line', level)
+    # other schemes: FIPS140-2 certs, EMVCo, Visa Certification, American Express Certification, MasterCard Certification
+    # download and analyse CC documentation
+    # solve treatment of unicode characters
+    # analyze bibliography
+    # Statistics about number of characters (length), words, pages - histogram of pdf length & extracted text length
+    # add keywords extraction for trademarks (e.g, from 0963V2b_pdf.pdf)
+    # FRONTPAGE
+      # extract frontpage also from other than anssi and bsi certificates (US, BE...)
+      # add extraction of frontpage for protection profiles
+    # PORTABILITY
+      # check functionality on Linux (script %%20 expansions..., \\ vs. /)
+    # Add processing of docx files
+    # search for ATR, Response APDU, and custom commands specifying the IC type (CPLC + others)
+      # e.g., KECS-CR-15-105 XSmart e-Passport V1.4 EAC with SAC on M7892(eng).txt
+    # use pdf2text -raw switch to preserve better tables (needs to be checked wrt existing regexes)
+    # add tool for language detection, and if required, use automatic translation into english (https://pypi.org/project/googletrans/)
+    # analyze technical decisions: https://www.niap-ccevs.org/Documents_and_Guidance/view_tds.cfm
+    # extract names of IC (or other devices) from certificates => results in the list of certified chips in smartcards etc.
+    # analyze SARs and SFRs in correlation with specific company (what level of SAR/SFR can company achieve?)