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authoradamjanovsky2024-02-20 12:54:46 +0100
committerGitHub2024-02-20 12:54:46 +0100
commit6415e71f282c36061b9268df7743b3e6504fa0dc (patch)
treea1915a8b33cb854077698e5dadcbb7478856e4ef
parent9f02cf2ef3e499bc4ded221cd918be1461e73708 (diff)
parent26d316ae23b1b47c8ac3543de233995dac85a67a (diff)
downloadsec-certs-0.2.1.tar.gz
sec-certs-0.2.1.tar.zst
sec-certs-0.2.1.zip
Merge pull request #395 from crocs-muni/revert-spacy-download0.2.1
revert spacy model download installation
-rw-r--r--.github/workflows/tests.yml1
-rw-r--r--CONTRIBUTING.md5
-rw-r--r--Dockerfile3
-rw-r--r--docs/installation.md3
-rw-r--r--docs/quickstart.md4
-rw-r--r--pyproject.toml1
-rw-r--r--requirements/all_requirements.txt6
-rw-r--r--requirements/dev_requirements.txt6
-rw-r--r--requirements/nlp_requirements.txt6
-rw-r--r--requirements/requirements.txt70
-rw-r--r--requirements/test_requirements.txt6
11 files changed, 46 insertions, 65 deletions
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 447c1eb7..51b13b90 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -27,6 +27,7 @@ jobs:
- name: Install sec-certs
run: |
pip install -e .
+ python -m spacy download en_core_web_sm
- name: Run tests
run: pytest --cov=sec_certs tests
- name: Code coverage upload
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 82687161..68f2ec14 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -35,13 +35,10 @@ Note on single-sourcing the package version: More can be read [here](https://pac
### Currently, the release process is as follows
1. Update dependencies with `pre-commit autoupdate`, pin new versions of linters into `pyproject.toml`.
-2. Run `cd requirements && ./compile.sh` to update dependencies.
-3. Use `python -m spacy download en_core_web_sm` to find out the current version of `en_core_web_sm` dependency. Update pyproject.toml link of `en_core_web_sm` dependency with up-to-date link from [GitHub](https://github.com/explosion/spacy-models/releases).
-4. Run `cd requirements && ./compile.sh` **again** to update dependencies.
+2. Run `cd requirements && ./compile.sh` to update dependencies, commit the changes.
5. Create a release from GitHub UI. Include release notes, add proper version tag and publish the release (or create it from scratch with new tag).
6. This will automatically update PyPi and DockerHub packages.
-
## Quality assurance
All commits shall pass the lint pipeline of the following tools:
diff --git a/Dockerfile b/Dockerfile
index 53a5a75f..e0040227 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -58,7 +58,8 @@ RUN \
pip3 install -U pip wheel pip-tools && \
pip-sync requirements/requirements.txt && \
pip3 install --no-cache notebook jupyterlab && \
- pip3 install -e .
+ pip3 install -e . && \
+ python -m spacy download en_core_web_sm
# just to be sure that pdftotext is in $PATH
ENV PATH /usr/bin/pdftotext:${PATH}
diff --git a/docs/installation.md b/docs/installation.md
index e62149e6..d489b03c 100644
--- a/docs/installation.md
+++ b/docs/installation.md
@@ -6,7 +6,7 @@
The tool can be installed from PyPi with
```bash
-pip install -U sec-certs
+pip install -U sec-certs && python -m spacy download en_core_web_sm
```
Note, that `Python>=3.10` is required.
@@ -31,6 +31,7 @@ git clone https://github.com/crocs-muni/sec-certs.git
python3 -m venv venv
source venv/bin/activate
pip install -e .
+python -m spacy download en_core_web_sm
```
Alternatively, our Our [Dockerfile](https://github.com/crocs-muni/sec-certs/blob/main/Dockerfile) represents a reproducible way of setting up the environment.
diff --git a/docs/quickstart.md b/docs/quickstart.md
index 49731e88..f2e3690f 100644
--- a/docs/quickstart.md
+++ b/docs/quickstart.md
@@ -3,7 +3,7 @@
::::{tab-set}
:::{tab-item} Common Criteria
-1. Install the latest version with `pip install -U sec-certs` (see [installation](installation.md)).
+1. Install the latest version with `pip install -U sec-certs && python -m spacy download en_core_web_sm` (see [installation](installation.md)).
2. In your Python interpreter, type
```python
from sec_certs.dataset.cc import CCDataset
@@ -16,7 +16,7 @@ to obtain to obtain freshly processed dataset from [seccerts.org](https://seccer
:::
:::{tab-item} FIPS 140
-1. Install the latest version with `pip install -U sec-certs` (see [installation](installation.md)).
+1. Install the latest version with `pip install -U sec-certs && python -m spacy download en_core_web_sm` (see [installation](installation.md)).
2. In your Python interpreter, type
```python
from sec_certs.dataset.fips import FIPSDataset
diff --git a/pyproject.toml b/pyproject.toml
index ae19a5c0..e1d4397c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -50,7 +50,6 @@
"ipykernel",
"ipywidgets",
"spacy",
- "en-core-web-sm @ https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.7.1/en_core_web_sm-3.7.1-py3-none-any.whl",
"pkgconfig",
"seaborn",
"pySankeyBeta",
diff --git a/requirements/all_requirements.txt b/requirements/all_requirements.txt
index 7a836c31..4424f3ac 100644
--- a/requirements/all_requirements.txt
+++ b/requirements/all_requirements.txt
@@ -130,8 +130,6 @@ docutils==0.19
# myst-parser
# pydata-sphinx-theme
# sphinx
-en-core-web-sm @ https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.7.1/en_core_web_sm-3.7.1-py3-none-any.whl
- # via sec-certs (./../pyproject.toml)
evaluate==0.4.1
# via setfit
executing==2.0.1
@@ -644,9 +642,7 @@ snowballstemmer==2.2.0
soupsieve==2.5
# via beautifulsoup4
spacy==3.7.2
- # via
- # en-core-web-sm
- # sec-certs (./../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
spacy-legacy==3.0.12
# via spacy
spacy-loggers==1.0.5
diff --git a/requirements/dev_requirements.txt b/requirements/dev_requirements.txt
index 1b028276..82951940 100644
--- a/requirements/dev_requirements.txt
+++ b/requirements/dev_requirements.txt
@@ -99,8 +99,6 @@ docutils==0.19
# myst-parser
# pydata-sphinx-theme
# sphinx
-en-core-web-sm @ https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.7.1/en_core_web_sm-3.7.1-py3-none-any.whl
- # via sec-certs (./../pyproject.toml)
executing==2.0.1
# via stack-data
fastjsonschema==2.19.0
@@ -449,9 +447,7 @@ snowballstemmer==2.2.0
soupsieve==2.5
# via beautifulsoup4
spacy==3.7.2
- # via
- # en-core-web-sm
- # sec-certs (./../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
spacy-legacy==3.0.12
# via spacy
spacy-loggers==1.0.5
diff --git a/requirements/nlp_requirements.txt b/requirements/nlp_requirements.txt
index 1445a3e2..3d96efa3 100644
--- a/requirements/nlp_requirements.txt
+++ b/requirements/nlp_requirements.txt
@@ -101,8 +101,6 @@ dill==0.3.7
# multiprocess
distro==1.8.0
# via tabula-py
-en-core-web-sm @ https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.7.1/en_core_web_sm-3.7.1-py3-none-any.whl
- # via sec-certs (./../pyproject.toml)
evaluate==0.4.1
# via setfit
executing==2.0.1
@@ -518,9 +516,7 @@ smart-open==6.4.0
soupsieve==2.5
# via beautifulsoup4
spacy==3.7.2
- # via
- # en-core-web-sm
- # sec-certs (./../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
spacy-legacy==3.0.12
# via spacy
spacy-loggers==1.0.5
diff --git a/requirements/requirements.txt b/requirements/requirements.txt
index 7f3b639c..209dc0ee 100644
--- a/requirements/requirements.txt
+++ b/requirements/requirements.txt
@@ -11,7 +11,7 @@ attrs==23.1.0
# jsonschema
# referencing
beautifulsoup4==4.12.2
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
blis==0.7.11
# via thinc
catalogue==2.0.10
@@ -27,7 +27,7 @@ charset-normalizer==3.3.2
# via requests
click==8.1.7
# via
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
# typer
cloudpathlib==0.16.0
# via weasel
@@ -58,24 +58,22 @@ deprecated==1.2.14
# via pikepdf
distro==1.8.0
# via tabula-py
-en-core-web-sm @ https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.7.1/en_core_web_sm-3.7.1-py3-none-any.whl
- # via sec-certs (../pyproject.toml)
executing==2.0.1
# via stack-data
fonttools==4.45.0
# via matplotlib
html5lib==1.1
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
idna==3.4
# via requests
ipykernel==6.27.0
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
ipython==8.17.2
# via
# ipykernel
# ipywidgets
ipywidgets==8.1.1
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
jedi==0.19.1
# via ipython
jinja2==3.1.3
@@ -83,7 +81,7 @@ jinja2==3.1.3
joblib==1.3.2
# via scikit-learn
jsonschema==4.20.0
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
jsonschema-specifications==2023.11.1
# via jsonschema
jupyter-client==8.6.0
@@ -101,14 +99,14 @@ langcodes==3.3.0
lxml==4.9.3
# via
# pikepdf
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
markupsafe==2.1.3
# via jinja2
matplotlib==3.8.2
# via
# pysankeybeta
# seaborn
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
matplotlib-inline==0.1.6
# via
# ipykernel
@@ -121,7 +119,7 @@ murmurhash==1.0.10
nest-asyncio==1.5.8
# via ipykernel
networkx==3.2.1
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
numpy==1.26.2
# via
# blis
@@ -132,7 +130,7 @@ numpy==1.26.2
# scikit-learn
# scipy
# seaborn
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
# spacy
# tabula-py
# thinc
@@ -150,24 +148,24 @@ pandas==2.1.3
# via
# pysankeybeta
# seaborn
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
# tabula-py
parso==0.8.3
# via jedi
pdftotext==2.2.2
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
pexpect==4.8.0
# via ipython
pikepdf==8.7.1
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
pillow==10.2.0
# via
# matplotlib
# pikepdf
# pytesseract
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
pkgconfig==1.5.5
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
platformdirs==4.0.0
# via jupyter-core
preshed==3.0.9
@@ -179,7 +177,7 @@ prompt-toolkit==3.0.41
psutil==5.9.6
# via
# ipykernel
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
ptyprocess==0.7.0
# via pexpect
pure-eval==0.2.2
@@ -190,49 +188,51 @@ pydantic==2.5.2
# via
# confection
# pydantic-settings
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
# spacy
# thinc
# weasel
pydantic-core==2.14.5
# via pydantic
pydantic-settings==2.1.0
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
pygments==2.17.2
# via ipython
pyparsing==3.1.1
# via matplotlib
pypdf[crypto]==3.17.1
- # via sec-certs (../pyproject.toml)
+ # via
+ # pypdf
+ # sec-certs (./../pyproject.toml)
pysankeybeta==1.4.1
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
pytesseract==0.3.10
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
python-dateutil==2.8.2
# via
# jupyter-client
# matplotlib
# pandas
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
python-dotenv==1.0.0
# via pydantic-settings
pytz==2023.3.post1
# via pandas
pyyaml==6.0.1
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
pyzmq==25.1.1
# via
# ipykernel
# jupyter-client
rapidfuzz==3.5.2
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
referencing==0.31.0
# via
# jsonschema
# jsonschema-specifications
requests==2.31.0
# via
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
# spacy
# weasel
rpds-py==0.13.1
@@ -240,17 +240,17 @@ rpds-py==0.13.1
# jsonschema
# referencing
scikit-learn==1.3.2
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
scipy==1.11.4
# via
# scikit-learn
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
seaborn==0.13.0
# via
# pysankeybeta
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
setuptools-scm==8.0.4
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
six==1.16.0
# via
# asttokens
@@ -263,9 +263,7 @@ smart-open==6.4.0
soupsieve==2.5
# via beautifulsoup4
spacy==3.7.2
- # via
- # en-core-web-sm
- # sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
spacy-legacy==3.0.12
# via spacy
spacy-loggers==1.0.5
@@ -279,7 +277,7 @@ srsly==2.4.8
stack-data==0.6.3
# via ipython
tabula-py==2.9.0
- # via sec-certs (../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
thinc==8.2.1
# via spacy
threadpoolctl==3.2.0
@@ -290,7 +288,7 @@ tornado==6.3.3
# jupyter-client
tqdm==4.66.1
# via
- # sec-certs (../pyproject.toml)
+ # sec-certs (./../pyproject.toml)
# spacy
traitlets==5.13.0
# via
diff --git a/requirements/test_requirements.txt b/requirements/test_requirements.txt
index 96f02e88..f3e76cd7 100644
--- a/requirements/test_requirements.txt
+++ b/requirements/test_requirements.txt
@@ -62,8 +62,6 @@ deprecated==1.2.14
# via pikepdf
distro==1.8.0
# via tabula-py
-en-core-web-sm @ https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.7.1/en_core_web_sm-3.7.1-py3-none-any.whl
- # via sec-certs (./../pyproject.toml)
executing==2.0.1
# via stack-data
fonttools==4.45.0
@@ -280,9 +278,7 @@ smart-open==6.4.0
soupsieve==2.5
# via beautifulsoup4
spacy==3.7.2
- # via
- # en-core-web-sm
- # sec-certs (./../pyproject.toml)
+ # via sec-certs (./../pyproject.toml)
spacy-legacy==3.0.12
# via spacy
spacy-loggers==1.0.5